Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0657 ATGGCGGCTGCTTCTGCTTCGTCATCGCTCTATCTCCTCCCCCGCACCCTCAACCACCACAGCTCCACCCCACACCCCAACCGCCTCTCCCTGTCGGGTCTCACCCCAAAGACACAGGCTTTACGCACCCGCCATGGAAGGCGCGCAAGGGCCACCGTTAGGGCGGCGGCGGTGGAGACGCTCCAGAAGGCGGACACGTCTCTGGTGGAGAAGTCGATCAACACGATAAGATTTCTGTCGATAGACGCAGTGGAGAAGGCGAATTCCGGTCACCCAGGTCTGCCCATGGGGTGTGCTCCCATGGGTCATATACTGTACGATGAGGTCATGAGGTACAACCCCTCCAACCCCTACTGGTTCAATCGTGATCGATTCGTTCTCTCCGCTGGCCACGGCTGTATGTTGCAGTATGCTTTACTTCATCTTGCTGGCTATGACAGTGTTAAGGAAGAGGATTTGAAGTCTTTCCGACAATGGGGAAGTAGAACTCCTGGTCACCCAGAGAACTTCGAGACACCTGGGGTTGAAGTGACAACTGGCCCTCTTGGTCAGGGTATTGCCAATGCTGTTGGTTTGGCCGCTGTGGAGAAGCATTTGGCTGCAAGATTCAACAAACCTGACAATGAGATTGTCGACCACTACACGTATGTGATACTTGGTGATGGATGTCAAATGGAAGGAATTTCAAATGAAGTTTGTTCCCTTGCTGGGCACTGGGGGCTTGGGAAGCTGATTGCATTTTATGATGATAACCACATTTCAATTGATGGTGACACTGAAATTGCATTTACTGAAAGTGTTGACACCCGTTTTGAGGGACTTGGGTGGCATGTGATTTGGGTGAAGAATGGTAACACTGGGTATGATGAAATTCGTGCTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGGTGACAACTACCATTGGTTATGGTTCTCCTAACAAGGCAAACTCATATAGTGTTCATGGGAGTGCATTGGGTGCTAAAGAAGTAGATGCAACAAGGAAGAACCTTGGTTGGCCTCACGAGCCATTCCACGTGCCAGAGGATGTCAAAAAGCACTGGAGCCGCCACATCCCTGATGGAGCTGCCCTTGAAGCTGAATGGAATGCCAAGTTTGCAGAGTATGAGAAGAAATACAAAGAAGAAGCAGCAGAATTAAAGTCCATCATCACTGGTGAACTACCTGCTGGTTGGGATAAAGCACTTCCGACTTACACTCCTGAAAGTGCTGCTGATGCTACCAGAAATCTGTCTCAACAATGTCTTAATGCTCTGGCCAAAGTTCTTCCTGGGCTCCTAGGTGGCAGTGCAGATCTTGCTTCCTCCAACATGACTTTGCTGAAAATGTTTGGTGACTTCCAAAAAGGCACCCCTGAAGAGCGAAATGTCCGTTTTGGTGTCAGGGAGCACGGAATGGGTGCCATCTGCAATGGAATTGCTCTGCACAGCCTTGGCCTTATTCCCTACTGTGCGACCTTCTTTGTTTTCACCGACTACATGAGGGCCGCCATTAGGATTTCTGCCTTAAGTGAAGCTGGAGTTATTTATGTGATGACCCATGATTCAATTGGGCTTGGAGAGGATGGACCAACTCATCAACCAATTGAGCATCTGGCAAGCTTCAGAGCCATGCCAAATATTCTAATGCTCCGTCCTGCTGATGGAAATGAGACTGCTGGTGCATATAAGGTTGCAGTTGTTAACAGAAAGAGACCCTCGATTCTTGCTCTCTCACGTCAAAAGCTTCCTCAGCTTCCTGGAACATCCATTGCAGGAGTTGAGAAAGGAGGTTACGCCATTTCTGACAATTCTTCAGGCAATAAGCCAGATGTTATTTTGATTGGAACTGGGTCCGAATTGGAGATTGCTGCCAAGGCAGGAGATGAGCTGAGGAAGGAAGGAAAGACTGTAAGGGTGGTATCCCTGGTTTCCTGGGAGTTGTTTGATGACCAGTCCGATGCATACAAGGAAAGTGTCCTCCCAGCTGCTGTAACAGCTAGAGTCAGTATTGAAGCAGGATCCACATTTGGATGGGAGAAGATTGTAGGAAGCAAGGGAAAGGCGATTGGCATTGACCGATTTGGAGCAAGTGCACCAGCAGGAAAGATCTACAAGGAGTTTGGAATTACAGTGGAGGCTGTAATTGAAGCAGCTAAGGCAGTTTGGTAG 2190 0.4895 MAAASASSSLYLLPRTLNHHSSTPHPNRLSLSGLTPKTQALRTRHGRRARATVRAAAVETLQKADTSLVEKSINTIRFLSIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPSNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKSFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLAAVEKHLAARFNKPDNEIVDHYTYVILGDGCQMEGISNEVCSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTESVDTRFEGLGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRKNLGWPHEPFHVPEDVKKHWSRHIPDGAALEAEWNAKFAEYEKKYKEEAAELKSIITGELPAGWDKALPTYTPESAADATRNLSQQCLNALAKVLPGLLGGSADLASSNMTLLKMFGDFQKGTPEERNVRFGVREHGMGAICNGIALHSLGLIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVVNRKRPSILALSRQKLPQLPGTSIAGVEKGGYAISDNSSGNKPDVILIGTGSELEIAAKAGDELRKEGKTVRVVSLVSWELFDDQSDAYKESVLPAAVTARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITVEAVIEAAKAVW* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0657 729 ProSitePatterns Transketolase signature 1. 77 97 IPR005474 -
Vvi16g0657 729 FunFam Transketolase 62 394 - -
Vvi16g0657 729 ProSitePatterns Transketolase signature 2. 533 549 IPR020826 -
Vvi16g0657 729 Gene3D - 395 601 - -
Vvi16g0657 729 FunFam Transketolase 602 729 - -
Vvi16g0657 729 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 396 IPR029061 -
Vvi16g0657 729 NCBIfam transketolase 71 728 IPR005478 GO:0004802
Vvi16g0657 729 SMART Transket_pyr_3 419 591 IPR005475 -
Vvi16g0657 729 Pfam Transketolase, pyrimidine binding domain 420 590 IPR005475 -
Vvi16g0657 729 FunFam Transketolase 395 601 - -
Vvi16g0657 729 Pfam Transketolase, C-terminal domain 615 721 IPR033248 -
Vvi16g0657 729 CDD TPP_PYR_DXS_TK_like 423 586 - -
Vvi16g0657 729 Gene3D - 602 729 IPR009014 GO:0003824
Vvi16g0657 729 Gene3D - 65 394 - -
Vvi16g0657 729 PANTHER TRANSKETOLASE 69 728 IPR033247 -
Vvi16g0657 729 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 401 592 IPR029061 -
Vvi16g0657 729 Coils Coil 372 392 - -
Vvi16g0657 729 Pfam Transketolase, thiamine diphosphate binding domain 71 402 IPR005474 -
Vvi16g0657 729 CDD TPP_TK 74 341 IPR005474 -
Vvi16g0657 729 SUPERFAMILY TK C-terminal domain-like 596 728 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0657 Vvi-Chr16 13451181 13454808 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0657 K00615 - vvi:100248004 1425.99