Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0645 ATGAGGGTGGTGGAAGGAATGCTAGTAAAGCTAATACAACCATCTCTGGAAGAAACTACAGTAACCTTCAAGAAATGGAAGATGAAGGAAAGTTGTCATCTTTACGTTTTTACGAGGGAATGGAAGTTGATAGTACATGACAATTCACTTGAGGCAAGAACTCGAATTCAAGAAACCTTGGAGGCTCATGATGGTGCCACCAAAGGAAAATACACTATTGGGCTTGGACAAGATTGCATGGCATTTTGTACAGAGGTGGAAGATGTCATCTCTATGAGGAATCTGGTAATACTGACATTAAAGGAGTGGATTCAACAAATGCATGCTATGGTGGGACTGCTTGTATCAATTGGGTGGAGAGTAGTTCATGGGATGGGCGTTATGGACTTCTTGTGTGCACCGACAATGCGTTACTTGTATGCCAAATGTTTTGCTGCCACCATATGGCAAAAGCTATGCCAGGAGTATCCACTATCCTTAGCCACAGGAACAGCTCTTCGGACAAAATTCTTCGAGCATGGGGGAGCCAAAGACCCTGCTGATTTATTGACTGATCTAGTTGGGATGGGATTCTCCAGTCCCATGATGGAGGGATAG 597 0.4389 MRVVEGMLVKLIQPSLEETTVTFKKWKMKESCHLYVFTREWKLIVHDNSLEARTRIQETLEAHDGATKGKYTIGLGQDCMAFCTEVEDVISMRNLVILTLKEWIQQMHAMVGLLVSIGWRVVHGMGVMDFLCAPTMRYLYAKCFAATIWQKLCQEYPLSLATGTALRTKFFEHGGAKDPADLLTDLVGMGFSSPMMEG* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0645 198 Pfam Peptidase family M3 137 188 IPR001567 GO:0004222|GO:0006508
Vvi16g0645 198 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 57 92 - -
Vvi16g0645 198 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 57 113 IPR013528 -
Vvi16g0645 198 Gene3D - 52 102 IPR016039 GO:0016746
Vvi16g0645 198 Gene3D Neurolysin, domain 3 127 195 IPR024077 -
Vvi16g0645 198 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 137 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0645 Vvi-Chr16 13259949 13281129 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0645 K01410 - vvi:109124225 119.012