Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0643 ATGGGCTGGCTTGGGCCCAAAATTCTATTTGGGCTGTTTTCGGAGTTTGGACATATGTTTGTTGTAGCCCTTGTTTGTAATTTTGCCGGTTCACGCAGTTCATCTTCTGCAAAGCTGAACCATTGGGAAGTAGAAACTCTTTTTCATGAGTTTGGACATGCTCTTCATTCTTTGCTTTCAAGAACGGATTACCAACATTTTTCAGGTACAAGGGTGGTTCTTGATTTGGCTGAAACACCTTCGAACCTATTTGAGTACTATGCATGGGACTATCGTGTCCTGAGGAAATTTGCCAGACACTATTCAACTGGTGAAGTAATACCTGAGAAATTGGTAGAGTCAATGCAGGGTGCCAGAAAGATGTTTGCTGCAACAGACTTGCAACGTCAGATCTTTTATGCCTTGATTGATCAAACACTTTTTGGGGAAGAACTATCTCGACAAAGAGATACCACGTCTGTTGTTGCAGATCTGAAAAGACAATATACTAGTTGGAAGCATGTGGAGGGTACTCATTGGCAAACCCGATTCAATCACCTGCTTAATTATGGTGCAGGTTACTATAGTTACTTGTATGCCAAATGTTTTGCTGCCACCATATGGCAAAAGCTATGCCAGGAGGATCCACTATCCTTAGCCACAGGAACAGCTCTTCGGACAAAATTCTTGGAGCATGGGGGAGCCAAAGACCCTGCTGATTTATTGACTGATCTAGTTGGGGATGGAATTCTCCAGTCCCGTGATGGAGGGATAGTCCCTGACCTCACTAGCCTTTGTGATGAACTGAAGCTTGAGGAGTGTGGGCAAGAGCATGTCGTCTTGTAA 825 0.4388 MGWLGPKILFGLFSEFGHMFVVALVCNFAGSRSSSSAKLNHWEVETLFHEFGHALHSLLSRTDYQHFSGTRVVLDLAETPSNLFEYYAWDYRVLRKFARHYSTGEVIPEKLVESMQGARKMFAATDLQRQIFYALIDQTLFGEELSRQRDTTSVVADLKRQYTSWKHVEGTHWQTRFNHLLNYGAGYYSYLYAKCFAATIWQKLCQEDPLSLATGTALRTKFLEHGGAKDPADLLTDLVGDGILQSRDGGIVPDLTSLCDELKLEECGQEHVVL* 275
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0643 274 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 21 242 IPR045090 GO:0004222|GO:0006508
Vvi16g0643 274 Gene3D Neurolysin, domain 3 88 240 IPR024077 -
Vvi16g0643 274 Pfam Peptidase family M3 20 241 IPR001567 GO:0004222|GO:0006508
Vvi16g0643 274 Gene3D Collagenase (Catalytic Domain) 18 87 IPR024079 GO:0008237
Vvi16g0643 274 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 18 240 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi16g0643 Vvi-Chr16 13239867 13244209 Proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0643 K01410 - vvi:100262804 521.931