Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0635 ATGATTAAAGAGAATCCAAATATAGGCGCCTCCTTGGATGCTCGTCAAGATATTGCCAACGTTGAGGTACCAAAACTGGGTAAAATTGCAGCAGTAAACGCCATCGGAGAGTGGGGACAGCCCAAATCTAGGATCACACATCTTGTATTCTGTACAACCACGAGCTTACAGATGCCTGGTGCCGACTATCAACTTGCTAAGATCCTAGGTCTCGAACCAAAGGTTAAACGGGTGATGTTGTACCTTCAAGGTTGCTTTGGTGGTGGGACTGCCCTCAGATTGGCTAAAGATCTAGCAGAGAACAACGTAGGTGCCCGTGTTCTTGTAGTATGTTCTGAAATCATAACATCGACTTTCCGTAAGCCTTCTGAGATCGAAGTAGAAAATTTAGTAGGCCAAGCTCTTTTTGGTGATGGAGCCGCAGCTCTAATTGTGGGATCAGATCCAGATACCTTAATTGAACGACCATTATTCCAGCTCATCTCCGCAGATCAAATGTTTATCCCTGATTCAGAGAATGCAGTTGAAGGGCATGTTTGTGAAATGGGCCTTGTTATTAATTTGGCAAAAAATGTGCCAAACCTAATTTTTGAGTACATAGACAAATGCATGGTTGAAGCTTTCGGTCCCCTTGGTATTACTGATTGGAACTCATTATTTTTCATCGTTCACCCAGGTGGTCGGGCAATTCTTGATCAAATTGAAGCAAAACTCAGCTTAAAAAAGGAAAAACTTGAAGTTAGTAGGCATGTGCTAAGGGAGTATGGAAATATTGTGAGTCCATGCGTGTTCTTTGTCATGGATGAGATGAGAAAAAAGTCTTTCAATGAAGAAAAGGCTACTACAGGGGAGGGATTGGAGTGGGGTGTTTTGTTGGGGTTTGGACCAGGCTTGACAGTGGAGACGGTTGTGCTACGCAGTCAGTGA 927 0.4347 MIKENPNIGASLDARQDIANVEVPKLGKIAAVNAIGEWGQPKSRITHLVFCTTTSLQMPGADYQLAKILGLEPKVKRVMLYLQGCFGGGTALRLAKDLAENNVGARVLVVCSEIITSTFRKPSEIEVENLVGQALFGDGAAALIVGSDPDTLIERPLFQLISADQMFIPDSENAVEGHVCEMGLVINLAKNVPNLIFEYIDKCMVEAFGPLGITDWNSLFFIVHPGGRAILDQIEAKLSLKKEKLEVSRHVLREYGNIVSPCVFFVMDEMRKKSFNEEKATTGEGLEWGVLLGFGPGLTVETVVLRSQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0635 308 FunFam Chalcone synthase 1 157 308 - -
Vvi16g0635 308 Pfam Chalcone and stilbene synthases, C-terminal domain 159 307 IPR012328 -
Vvi16g0635 308 Gene3D - 157 308 IPR016039 GO:0016746
Vvi16g0635 308 FunFam Chalcone synthase 2 1 156 - -
Vvi16g0635 308 SUPERFAMILY Thiolase-like 156 307 IPR016039 GO:0016746
Vvi16g0635 308 SUPERFAMILY Thiolase-like 10 152 IPR016039 GO:0016746
Vvi16g0635 308 Pfam Chalcone and stilbene synthases, N-terminal domain 2 149 IPR001099 -
Vvi16g0635 308 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 307 IPR011141 GO:0009058|GO:0016747
Vvi16g0635 308 CDD CHS_like 3 305 - -
Vvi16g0635 308 Gene3D - 1 156 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0635 Vvi-Chr16 12948452 12949378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0635 84 307 Miscellaneous Gene Families AT3G52160 26.180 5.28e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0635 K00660 - vvi:100248612 602.053