Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0632 ATGTGGGCTGCCCAGTATTACAAGCATAAGAATCCCCGCCACTGGCTCTCTTCAAGTGGATTAGGAGCAATGGGGTTCGGATTACCTGCTGCTATGGGTGCTGCACTCGCTAAACCTGACGCAATTGTTGTCGACATTGATGGTGACGGAAGCTTTATGATGAATATCCAGGAATTGGCTACAATACGAGTGGAAAATCTGCCAGTGAAGATTATGCTATTGAATAATCAGCACCTTGGCATGGTTTATCAATTTGAGTATGAATATGGGGACGGTGATTCGTTGCACTCATACATGGGGAATCCATCGAACCAGGCCCAAGTATTTCCTGACATGTTGATGTTTGCGGAAGCTTGCAACATAACTGCAGCCCGTGTGACAAAGAAAGTAGAGCTGAGAGAGGCAATAGAGAAGATGTTGAAGACTCCTGGTCCATATCTGCTAGATGTGATGGTACCCCATCAAGCACAAGTGCTGCAGTTGATTCCCGATGGTGGCACTTTCAAAGATGCTATCAAAGGTGCTCAGTAA 531 0.4595 MWAAQYYKHKNPRHWLSSSGLGAMGFGLPAAMGAALAKPDAIVVDIDGDGSFMMNIQELATIRVENLPVKIMLLNNQHLGMVYQFEYEYGDGDSLHSYMGNPSNQAQVFPDMLMFAEACNITAARVTKKVELREAIEKMLKTPGPYLLDVMVPHQAQVLQLIPDGGTFKDAIKGAQ* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0632 176 Gene3D - 1 151 - -
Vvi16g0632 176 ProSitePatterns Thiamine pyrophosphate enzymes signature. 32 51 IPR000399 GO:0000287|GO:0030976
Vvi16g0632 176 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 1 150 IPR011766 GO:0003824|GO:0030976
Vvi16g0632 176 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 1 168 IPR045229 -
Vvi16g0632 176 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 170 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0632 Vvi-Chr16 12843609 12844139 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0632 K01652 - vvi:100246801 353.214