Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0630 ATGTTGCAGCTACAAACATCACCTACCAGCACAAAGTGTCTCTCCCACTGCCACCTCAGTGTCAATCCCGAACCCTCCCTGGGCGCCCCAGAAACCTTCGTTTCCCGGTTCGCTGCAGACCAGCTGAGGAAGGGCAGTGACATCCTTGTGGAAGCCCTGGAAAGTGAAGGGGTGACTCATGTCTTTGGTTACCCGGGGGGAGCCTACATGGAGATTCACGAAGCCCTCGCTCGCTCCTCCATGATCAGAAACGTGCTGCCCAGACATGAGCAAGGGGGCATATTTGCGGAAGACGGCTATGCTCGCGCTTCCGGACGCCCTGGTGTCTACCTCACCTCCCCTGGTCTAGGCGCCACTAATATTATCAGCGGCATTGCGGATACAAACTTCGATAGCATACCCATCGTGGCCATTACTGGGCAGGTCCCACGAGGATTGATGGGGACCGATGCCTTCCAAGAAGTCCCACTTATTGATATAACTCGACCGATCACAAAGTTCAATTATTTAGTTCTTGATGTTGAAGACATTCCTCGCATAGTTAAAGAAGCCTTTCTCCTTGCAACTTCAGGCCAACCTGTGTCAAAGAGGCCAGTTGTGTATGCTGGTGGAGGGTGTATGAACTGCAGTGAAGAGTTAAGGTGGTTTGTGGGGCTCACGGGTATACCTGTGGCAAGTACTTTAATGGGTCTAGGGATTTTCCCATGCACGGATGACCTATCTCTTCATATGCTCGGAATGCATGGGACTATACAAGCAAACTACGCTGTGGACAGGTCTGATTTGTTGCTAGCATTTGGTGTCCGATTTGACGATCGGGTAACAGGGACAAAGTTTAATGACAAGGTATCGGCTTGGATAGAGGAAATTGATGAGCAGAAAGAGAAGCACCCACCAAGTTATAGAACATTTGGAGAGGCTATTCCTCCACAGTATGCTATTCAACTTTTGGATGAATTAACTAATGGAAATGCTATTATTTGTACCGGAGTCGGCCAGCATCAGATGTGGGCTGCCCAGTATTACAAGCATAAGAATCCCCGCCACTGGCTCTCTTCAAGTGGATTAGGAGCAATGGGGTTCGGATTGCCTGCTGCTATGGGTGCTGCACTTGCTAAACCCGACGCAATTGTTGTCGACATTGATGGTGACGGAAGCTTTATGATGAATATCCAGGAATTGGCTACAATACGAGTGGAAAATCTGCCAGTGAAGATTATGCAATTGAATAACCAGCACCGTGGCATGGTTTATCAATTTCAGTATGAATATAGGGACGTATTTCCTGACATGTTGATGTTTGCGGAAGCTTGCAACATAACTGCAGCCCGTGTGACAAAAAAAGCAGAGCTGAGAGAGGCAATAGAGAAGATGTTGAAGACTCCTGGTCCATATCTGCTAGATGTGACGGTAACCCATCAAGCACAAGTGCTGCAGTTGATTCCCGATGGTGGCACTTTCAAAGATGCTATCAAAGGTGCTCAGTAA 1488 0.4839 MLQLQTSPTSTKCLSHCHLSVNPEPSLGAPETFVSRFAADQLRKGSDILVEALESEGVTHVFGYPGGAYMEIHEALARSSMIRNVLPRHEQGGIFAEDGYARASGRPGVYLTSPGLGATNIISGIADTNFDSIPIVAITGQVPRGLMGTDAFQEVPLIDITRPITKFNYLVLDVEDIPRIVKEAFLLATSGQPVSKRPVVYAGGGCMNCSEELRWFVGLTGIPVASTLMGLGIFPCTDDLSLHMLGMHGTIQANYAVDRSDLLLAFGVRFDDRVTGTKFNDKVSAWIEEIDEQKEKHPPSYRTFGEAIPPQYAIQLLDELTNGNAIICTGVGQHQMWAAQYYKHKNPRHWLSSSGLGAMGFGLPAAMGAALAKPDAIVVDIDGDGSFMMNIQELATIRVENLPVKIMQLNNQHRGMVYQFQYEYRDVFPDMLMFAEACNITAARVTKKAELREAIEKMLKTPGPYLLDVTVTHQAQVLQLIPDGGTFKDAIKGAQ* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0630 495 Gene3D - 300 469 - -
Vvi16g0630 495 SUPERFAMILY DHS-like NAD/FAD-binding domain 195 278 IPR029035 -
Vvi16g0630 495 CDD TPP_AHAS 308 484 IPR039368 GO:0030976
Vvi16g0630 495 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 308 488 IPR029061 -
Vvi16g0630 495 Gene3D - 32 197 - -
Vvi16g0630 495 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 38 193 IPR029061 -
Vvi16g0630 495 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 330 469 IPR011766 GO:0003824|GO:0030976
Vvi16g0630 495 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 44 193 IPR012001 GO:0030976
Vvi16g0630 495 FunFam Acetolactate synthase 38 196 - -
Vvi16g0630 495 Gene3D - 198 280 - -
Vvi16g0630 495 Gene3D - 282 299 - -
Vvi16g0630 495 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 280 487 IPR045229 -
Vvi16g0630 495 ProSitePatterns Thiamine pyrophosphate enzymes signature. 367 386 IPR000399 GO:0000287|GO:0030976
Vvi16g0630 495 Pfam Thiamine pyrophosphate enzyme, central domain 195 280 IPR012000 GO:0000287|GO:0030976
Vvi16g0630 495 CDD TPP_PYR_POX_like 47 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0630 Vvi-Chr16 12778035 12779908 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0630 K01652 - vvi:100259979 660.988