Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0605 ATGGTGGAGCCAGACGACGCCGTTTTGGTGGTTGAAGATGAAGATTTCCTGAGCGCCGTGGCAGCAGTGGAGGCCAATGCTCTGTCGAACAAGCGGCGCAGGACCTACACCTCCGACGCTGCAAAAGAAGGCATCTACACTGCCGCTCTCAGAGGGAGCAACAGTCTGGCGTGGAAGCAGAGCGCCACCGCCGCATCCGGTGCTCCGAGCAGCAGAGGATCATCCTCTGTTTCTTCCTCCGGTAAATCGGACGGCGGAGATTCTTCCCCTCCCGAGAAGCCATGCCCCTGCGGATTGGGAACCTGTCTCATTCTCACTTCCAACACCCAGAAAAACCCGGGCCGCAAATTCTACAAATGTCCTCTCAGAGAGGAAAATGGGGGCTGTGGGTTCTTCCAGTGGTGTGACAATTCTTCTGGAATTAGTAACGATGCTTTTGGGGCTATAAATCCTGGATTGAACTCTTCATTCCCTGACCTTAAATGTCCCTGTGGTGCTGGTTCTTGCCTGATTCTAACTGCAAAAACCGGTAATAATGCCGGGCAGCAGTTCTACCGCTGCCCTGCTAACCAGGGAGGTTCTTGTGGGTTTTTCAAATGGTGCAATGATCAAACTGTACCAGCTGGGCTCCCAGTTGGTGCTTCGAGGGGTTATAACACCACCACCAATGCAAGCATCAAAAGCTATGGGGCACAAAGTGGTTCTTCCTGTTTCAAATGTGGCAAGGAAGGGCATTGGGCAAAAGATTGCCAGATGCCTTCACCCGAACCCCTTGCTGATTCGGGAGGGAGGCCTGCTTCATCAGGTACCTGTTATAAGTGTGGTAAGCCTGGTCACTGGGCAAGAGACTGCTCTTCTAGTCAAGATACAAAAGTATGGCAGAGACGGTAA 891 0.5253 MVEPDDAVLVVEDEDFLSAVAAVEANALSNKRRRTYTSDAAKEGIYTAALRGSNSLAWKQSATAASGAPSSRGSSSVSSSGKSDGGDSSPPEKPCPCGLGTCLILTSNTQKNPGRKFYKCPLREENGGCGFFQWCDNSSGISNDAFGAINPGLNSSFPDLKCPCGAGSCLILTAKTGNNAGQQFYRCPANQGGSCGFFKWCNDQTVPAGLPVGASRGYNTTTNASIKSYGAQSGSSCFKCGKEGHWAKDCQMPSPEPLADSGGRPASSGTCYKCGKPGHWARDCSSSQDTKVWQRR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0605 296 SMART c2hcfinal6 270 286 IPR001878 GO:0003676|GO:0008270
Vvi16g0605 296 SMART c2hcfinal6 236 252 IPR001878 GO:0003676|GO:0008270
Vvi16g0605 296 MobiDBLite consensus disorder prediction 64 92 - -
Vvi16g0605 296 ProSiteProfiles Zinc finger CCHC-type profile. 271 284 IPR001878 GO:0003676|GO:0008270
Vvi16g0605 296 PANTHER OS07G0190500 PROTEIN 156 285 - -
Vvi16g0605 296 MobiDBLite consensus disorder prediction 277 296 - -
Vvi16g0605 296 Pfam GRF zinc finger 161 203 IPR010666 GO:0008270
Vvi16g0605 296 Pfam GRF zinc finger 94 137 IPR010666 GO:0008270
Vvi16g0605 296 ProSiteProfiles Zinc finger CCHC-type profile. 237 250 IPR001878 GO:0003676|GO:0008270
Vvi16g0605 296 SUPERFAMILY Retrovirus zinc finger-like domains 231 288 IPR036875 GO:0003676|GO:0008270
Vvi16g0605 296 MobiDBLite consensus disorder prediction 64 86 - -
Vvi16g0605 296 ProSiteProfiles Zinc finger GRF-type profile. 162 204 IPR010666 GO:0008270
Vvi16g0605 296 Gene3D - 230 262 - -
Vvi16g0605 296 Gene3D - 263 292 - -
Vvi16g0605 296 Pfam Zinc knuckle 269 285 IPR001878 GO:0003676|GO:0008270
Vvi16g0605 296 Pfam Zinc knuckle 236 251 IPR001878 GO:0003676|GO:0008270
Vvi16g0605 296 ProSiteProfiles Zinc finger GRF-type profile. 95 138 IPR010666 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0605 - - vvi:100245024 590.497