Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0604 ATGGAGATGGGCGGAGGGAAGATGATAGGAGTAATGATGGTGATGACTATGGTGGTGAGTGTGTCTTCACAGGATTATGGAGATGCCTTGACGAAGAGCATTTTGTTTTTTGAAGGCCAAAGGTCTGGAAAGTTGCCTTCTTCCCAGAGGGTTAATTGGAGAAAGGATTCTGGTGTGAATGATGGCAAAGATGTCAAGGTGGATTTGACCGGAGGCTACTATGATGCTGGAGACAACGTAAAATTCAACTTCCCAATGGCATTCACCACAACCCTTCTAGCATGGAGTGTGATAGAATTTGGGCAGTTCATGGACCCAGACCTTCAAAATGCGCTGGACGCCGTTCGATGGGGCACTGACTACTTGCTCAAAGCTACCACCACTCCTGGCACTGTCATTGCTCTTGTTGGCGATCCCTTCGGTGACCATTATTGCTGGGAAAGGCCTGAAGACATGGACACTCCTCGGACCACTTATGAAGTCAACACTACGTCTCCCGGTTCAGAAGTCTCAGCAGAGATAGCCGCTGCGCTTGCTGCAGCTTCCATAGCTTTCAATGCTTCTGATTCTCAGTACTCCCAAACACTTGTAACCCGGGCAATATCGGTATTCGACTTTGCAGATAAGAATAGGGGTTCCTACAATGATGCTATCGGTCGCGTGGTGTGCCCATATTATTATTGTGATGGCAGTGGTTACATGGATGAATTGGGTTGGGGAGCAGCATGGTTATACAAAGCAACTAACAACGAGTCTTATTGGAACTATGTTCAATACACCATAAACAATTTGCCAAAGTATATAAAGGTGATGGATACTGATGGAACCCTAAGCTACCGTGATAACTTTGCAGAATTTGGATGGGACACCAAAGTTGCGGGCATTAACGTCCTCGTCTCCGGGTGGGTACTGCAGGAAAAACTTGATGCAAGTCCCTTTGTCCTTGATGCTGACAGATTTGTTTGTACCATATTGCCTGAATCGCCTACTAAATCCGTTACATACTCTCCAGGTGGGCTCCTGTTCAAAAGTGGTCCAAGTAACATGCAGCATGCAACGACATTGTCTTTTCTTCTTGTTGTTTATGCTGGCTACTCAAAAGGTAATGGAAGACAGATTCAATGCGGTAATGTTGTTGTCTCTCCGGATAGGCTTGTAGAAGTCTCAAAAAGCCAGGTGAATTACATTTTAGGAAACAATCCATTGGGCATGTCATACATGGTGGGTTATGGTGACAAATTTCCGAACAGGATACATCACCGAGGCTCATCCTTACCTTCCATGGATGCGCACCCAGATCGCATTGACTGTAATGGGGGAACGCCCTACTTTCAGACCCAAGATCCAAATCCAAACTTGCTAACGGGGGCTGTTGTTGGAGGACCTGCTCCCGATGATTCATATGCAGATTCTCGAGCCGATGTTTCACAATCGGAGCCAGCAACATATATAAATGCTCCTCTCGTTGGTTTATTGGCATACTTCAAAGCTAATTCTTGA 1500 0.4593 MEMGGGKMIGVMMVMTMVVSVSSQDYGDALTKSILFFEGQRSGKLPSSQRVNWRKDSGVNDGKDVKVDLTGGYYDAGDNVKFNFPMAFTTTLLAWSVIEFGQFMDPDLQNALDAVRWGTDYLLKATTTPGTVIALVGDPFGDHYCWERPEDMDTPRTTYEVNTTSPGSEVSAEIAAALAAASIAFNASDSQYSQTLVTRAISVFDFADKNRGSYNDAIGRVVCPYYYCDGSGYMDELGWGAAWLYKATNNESYWNYVQYTINNLPKYIKVMDTDGTLSYRDNFAEFGWDTKVAGINVLVSGWVLQEKLDASPFVLDADRFVCTILPESPTKSVTYSPGGLLFKSGPSNMQHATTLSFLLVVYAGYSKGNGRQIQCGNVVVSPDRLVEVSKSQVNYILGNNPLGMSYMVGYGDKFPNRIHHRGSSLPSMDAHPDRIDCNGGTPYFQTQDPNPNLLTGAVVGGPAPDDSYADSRADVSQSEPATYINAPLVGLLAYFKANS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0604 499 PANTHER ENDO-1,4-BETA-GLUCANASE 12 497 - -
Vvi16g0604 499 SUPERFAMILY Six-hairpin glycosidases 21 496 IPR008928 GO:0005975
Vvi16g0604 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Vvi16g0604 499 Gene3D - 22 499 IPR012341 GO:0005975
Vvi16g0604 499 FunFam Endoglucanase 22 499 - -
Vvi16g0604 499 Pfam Glycosyl hydrolase family 9 26 492 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0604 Vvi-Chr16 12176866 12181868 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0604 8 499 Glycoside Hydrolase AT1G70710 54.970 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0604 K01179 - vvi:100267334 973