Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0602 ATGGTGGGATATGGAAACAGCTTTCCGCAGAGGATACACCATCGAGCCTCATCCTTACCTTCCGTGGATGCATACCCCGCTCACATCGACTGTCAAGGCGGATCGCAGTACTTTCAAACAGAAAATCCTAATCAAAACTTACTAATAGGAGCTGTTGTTGGAGGACCTGCAGCAGATGATTCATATGTAGATTTTCGCATTGATGTTTCACAATCAGAGCCAATCACGTATATAAATGCTCCTCTTGTGGGGGCATTAGCATACTTCAAAGCATTTCCATCCTCATAG 288 0.4444 MVGYGNSFPQRIHHRASSLPSVDAYPAHIDCQGGSQYFQTENPNQNLLIGAVVGGPAADDSYVDFRIDVSQSEPITYINAPLVGALAYFKAFPSS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0602 95 Pfam Glycosyl hydrolase family 9 1 86 IPR001701 GO:0004553|GO:0005975
Vvi16g0602 95 Gene3D - 1 92 IPR012341 GO:0005975
Vvi16g0602 95 PANTHER ENDO-1,4-BETA-GLUCANASE 1 90 - -
Vvi16g0602 95 SUPERFAMILY Six-hairpin glycosidases 1 91 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0602 Vvi-Chr16 12151101 12151388 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0602 1 91 Glycoside Hydrolase AT1G70710 64.835 6.16e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0602 K01179 - vvi:100251926 197.978