Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0590 ATGATGGGGAGATTTTCGGTTTCTAGTTTGGTTGTAGCAATTCTCTGTTTAGTGACAAGAGAATTTGTTTGCAAAGGTGAAACTCAGTTGGTAATTTGTCTAGAGTATGATCGAGAGGCTCTCATCGATCTCAAAAGGGGTCTCAAAGATCCCGAGGACCGGCTTTCATCGTGGAGTGGGAGCAATTGCTGCCAATGGCGAGGAATCGCTTGTGAAAATAGTACTGGAGCTGTTATTGGAATTGATCTGCACAACCCATATCCATTGAATTTTGCTGATTCCACTAGCAGGTACGGATATTGGAACTTAAGTGGAGATATTAGACCTTCTTTATTAAAACTCAAGTCCTTGAGACATTTAGATTTGAGCTTCAACAAATTTCAAAGCATCCCAGTTCCAAAATTCTTTGGATCATTGAAGAGTTTGCAGTATCTGAACCTATCCAATGCTGGGTTTAGTGGTGCAATTCCTTCAAATTTGGGAAATCTCTCTAACTTACAGTATCTTGATGTTTCTTCTGGAAGTTTAACCGCTGATGATCTTGAATGGATGGCTGGTCTTGGTTCCTTGAAGCATCTTGAGATGAACCAAGTTGACCTTTCAATGATAGGGTCAAACTGGCTTCAGATATTAAACAAGCTTCCCTTCTTAACTGATCTGCATCTATCAGGATGTGGTCTATCTGGTTCCATTTCATCTCTTGACTATGTAAACTTTACATCACTTGCTGTTATAGCCATTGGTGGTAACAACTTTAACTCAAAGTTCCCTGTGTGGCTTGTGAACATTAGTAGCCTTGTATCCATCGATATAAGCAGCAGCAGCTTATATGGAAGGGTTCCTCTTGGTCTCAGTCAGCTACCTAATTTGAAGTACTTGGATCTTTCCATGAACAATGATCTTACAGCTAGTTGCTTTCAGCTGTTCAGAGGAAACTGGAAAAAAATAGAGTTTCTCGAGTTGGGTTCAAATAAATTACATGGGAAACTTCCTGCTCCATTGGAAAACTTTGCAATCTGA 1020 0.4 MMGRFSVSSLVVAILCLVTREFVCKGETQLVICLEYDREALIDLKRGLKDPEDRLSSWSGSNCCQWRGIACENSTGAVIGIDLHNPYPLNFADSTSRYGYWNLSGDIRPSLLKLKSLRHLDLSFNKFQSIPVPKFFGSLKSLQYLNLSNAGFSGAIPSNLGNLSNLQYLDVSSGSLTADDLEWMAGLGSLKHLEMNQVDLSMIGSNWLQILNKLPFLTDLHLSGCGLSGSISSLDYVNFTSLAVIAIGGNNFNSKFPVWLVNISSLVSIDISSSSLYGRVPLGLSQLPNLKYLDLSMNNDLTASCFQLFRGNWKKIEFLELGSNKLHGKLPAPLENFAI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0590 339 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 203 339 - -
Vvi16g0590 339 ProSiteProfiles Leucine-rich repeat profile. 116 137 IPR001611 GO:0005515
Vvi16g0590 339 FunFam Leucine-rich repeat (LRR) family protein 34 202 - -
Vvi16g0590 339 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Vvi16g0590 339 Gene3D Ribonuclease Inhibitor 215 339 IPR032675 -
Vvi16g0590 339 SUPERFAMILY L domain-like 33 331 - -
Vvi16g0590 339 Pfam Leucine rich repeat 116 173 IPR001611 GO:0005515
Vvi16g0590 339 PANTHER LRR RECEPTOR-LIKE KINASE 212 299 - -
Vvi16g0590 339 Pfam Leucine Rich repeat 287 302 IPR001611 GO:0005515
Vvi16g0590 339 SMART LRR_typ_2 287 311 IPR003591 -
Vvi16g0590 339 SMART LRR_typ_2 114 138 IPR003591 -
Vvi16g0590 339 SMART LRR_typ_2 139 163 IPR003591 -
Vvi16g0590 339 Gene3D Ribonuclease Inhibitor 33 214 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0590 Vvi-Chr16 11946895 11947987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0590 102 339 Receptor kinase-like Gene Family AT3G28890 26.241 8.21e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0590 - - vvi:100265616 639.032