Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi16g0575 | ATGGCTTCATCCCTTGCTCTCAGGTCACTTCTCTCCAAGTCTCTTCGCCCCAATTTCCGTGCTCTAGCCACAGCTCCCTCGGTCTCTCGATCCTTCAACACCAACGCCATCCGCGATTACGATGATGATGAGCGTCGTCTCGATGTTGATCGCCTCTCTGATCGCTCCTTCTCTCGAAGAGGCGATTTTGCTCCTAGCTCCTTCTCAGATGTGTTCGATCCTTTTTCACCGACTCGGAGTCTGAGCCAGGTCCTGAACCTGATGGACCATTTCATGGACAATCCATTCCTCTCGACATCTCGAGGTATGGGAACTGGAATTCGGCGATCATGGGACGTGAAAGAAACCGACGACGCTTTGCATCTGAGAGTGGACATGCCTGGACTGAGTAAAGAGGACGTGAAGGTAAGCGTGGAGCAGAACACTCTGACCATCCAAGGCGAAGAAAAGAACGAAACGGAGGACGAAGAGAGCCGGAGGAGATACAGCAGCAGAATTGATTTGCCGGAGAAGCTGTACAAGACTGGTGAGATAAAGGCTGAGATGAACAAAGGTGTGCTGAAGATTGTGGTGCCAAAGCTGAAGGAAGAGGAGAGGACTGACGTCATCAATGTCAAGGTTGAGTAG | 627 | 0.512 | MASSLALRSLLSKSLRPNFRALATAPSVSRSFNTNAIRDYDDDERRLDVDRLSDRSFSRRGDFAPSSFSDVFDPFSPTRSLSQVLNLMDHFMDNPFLSTSRGMGTGIRRSWDVKETDDALHLRVDMPGLSKEDVKVSVEQNTLTIQGEEKNETEDEESRRRYSSRIDLPEKLYKTGEIKAEMNKGVLKIVVPKLKEEERTDVINVKVE* | 209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi16g0575 | 208 | Gene3D | - | 66 | 207 | IPR008978 | - | |
| Vvi16g0575 | 208 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 98 | 208 | IPR002068 | - | |
| Vvi16g0575 | 208 | Pfam | Hsp20/alpha crystallin family | 112 | 207 | IPR002068 | - | |
| Vvi16g0575 | 208 | SUPERFAMILY | HSP20-like chaperones | 77 | 199 | IPR008978 | - | |
| Vvi16g0575 | 208 | CDD | ACD_sHsps-like | 112 | 193 | - | - | |
| Vvi16g0575 | 208 | PANTHER | 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL | 23 | 203 | IPR044656 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi16g0575 | Vvi-Chr16 | 11604893 | 11606067 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi16g0575 | K13993 | - | vvi:100253548 | 348.206 |