Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0573 ATGATGATAGACTTGAGCGCATTCTCGGAGGAGAAATTCGATGCGAAGAAATGGATCAACACGGCGTGCCAAAATCGTCACCCGCAGGAGACTCTGGAGAAGCAGTTGGTGGATCTGGAGATGAAACTTCAGATGATGTCGGAGGAGATCGCCGCCTCCCTCGAGGAGCAGAGCGCTGCCGCCCTCCTCCGCGTCCCCCGCGCCACCCGCGATGTCATCCGCCTCCGCGACGACGCCGTTTCGCTTCGCCACTCCGTCTCCTCCATTCTCCTCAAGCTCAAGAAGGCAGAGGGATCCTCAGCAGAATCTATAGCTGCCCTTGCTAAAGTTGATATTGTCAAGCAGAGAATGGAAGCTGCCTATGAGACATTACAGGATGCTGCTGGGCTAACTCAATTAAGCTCTACTGTGGAGGATGTCTTTGCTAGTGGTGATCTTCCTAAGGCTGCAGAAACCTTGGCCAACATGAGGCACTGCTTGTCTGCTGTTGGGGAGGTTGCTGAATTTGCTAACATTAGGAAACAACTTGAAGTTTTGGAGGATAGGCTTGATTCAATGGTTCAGCCTCGTCTCACGGACGCTTTATCTAATCGCAAGGTTGAGGTTGCTCAAGATTTGCGGGGAATTCTCATTCGGATTGGAAGGTTTAAGTCTCTAGAAGCACATTATACAAAAGTTCACCTAAAGCCCATAAGGCAACTTTGGGAAGATTTTGACTCCAAACAGCGAACTAATAAACTTGCAAATGAGAAGAATGAAGTAGAAAGGCTATTGAGTAGCAATGACTTCCAATCTATTTTGCCCACAATTTCATTCTCCAGTTGGTTGCCAAGTTTCTATGATGAATTGCTGCTCTATCTTGAACAAGAATGGAAATGGTGTATGATCGCTTTTCTGGATGATTATAAAACTCTTGTCCCAAAGCTACTAATTGAGACAATGGCAACTATTGGTTCAAATTTTGTCTCTCGGATCAATCTTGCAACTGGGGATGTTGTTGCTGAAACCAAGGCATTGGCTAAAGGCATACTAGATATCTTGTCTGGGGATATGCAAAAAGGTATCAAAATCCAGAGCAAGCATCTTGAGGCACTGATTGAGTTACACAATATGACGGGAACATTTGCGAGGAATGTACAGCATCTATTTTCAGAATCCAATCTTCCAGTGTTATTGGATACACTGAAGGCAGTGTACCTTCCTTATGAATCATTTAAGCAGAGGTATGGACAGATGGAACGTGTCATACTTTCTTCTGAAATTGCTGGTGTAGATCTAAGAGGAGCCGTTGTGCGTGGTGTGGGAGCCCAGGGTATTGAACTCAGTGAAACAGTTAGAAGGATGGAGGAGTCTATTCCCCAAGTCATTCTGTTCCTTGATGAGGCTGTCGAGAGGTGCATCAGTTTTACTGGTGGTTCTGAGATAGATGAACTAATTCTAGCACTAGATGACATAATGTTACAGTACATCTCTACCCTGCAAGAGACCCTCAAATCATTAAGAGCTGTATGTGGAGTAGATACTGGTGATGGTGGTGGTACAAAGAAGGAAATGGTATCGGACAGAAAAGAAGGAACTCATAATGCACGCAAAGTAGACTTGATGTCAAATGAGGAAGAGTGGTCTATTGTCCAAGGTGCATTGCAGATCCTCACAGTTGCAGATTGTTTAACAAGCAGATCCGCAGTCTTTGAAGCTTCCTTGAAGGCCACTCTTGCTAGACTGAGCACAAGTTTGTCCCTTTCAGTGTTTGGTTCAAATTTGGACCAAAATCAGTCACATGTAGCCAGTGATGATGGGAATGGGGAATCGTCTATGATTGGAAGGGCTGCCTTGGATGTGGCATCTGTGCGGCTGGTTGATGTTCCGGAGAAGGCTCGGAGACTCTTTAACCTTTTAGATCAGTCTAAAGACCCACGGTTTCATGCACTTCCACTTGCATCTCAGAGGGTTGCAGCATTTGCAGACACAGTGAATGAACTTGTTTATGATGTCCTCATATCCAAAGTAAGGCAGCGCCTCAGTGATGTATCCCGTTTGCCCATCTGGTCTGCTGTAGAGGAACCAAGCGCTTTTCCTCTTCCGAGTTTCAATGCATACCCTCAGGCCTATGTGACCAGTGTTGGTGAATATCTTCTTACTTTGCCTCAACAGTTGGAGCCACTTGCTGAGGGCATTTCTAGCAGTGACCCCAATGCTGATGAAGCTCAGTTCTTTGCAACTGAATGGATGTTCAAGGTTGCTGAGGGTGCTACTGCTCTTTACATGGAGCAATTGCGAGGCATTCAATACATAACAGATCGTGGAGCACAGCAGCTATCAGCTGACATCGAGTATTTGAGTAATGTGCTTTCTGCTTTATCAATGCCGATCCCTCCAATCCTGGCCACATTCCACTCATGCCTTTCAACTCCAAGAGATCAGCTGAAGGATTTTGTAAAATCAGATGCAGGAAATCAGCTTGATCTTCCAACTGCCAACCTTGTATGTAAGATCCGGCGTATTTTTTCATGGCAAGAAGCCGAAAACAGGGTTGGTTCCTAG 2544 0.4564 MMIDLSAFSEEKFDAKKWINTACQNRHPQETLEKQLVDLEMKLQMMSEEIAASLEEQSAAALLRVPRATRDVIRLRDDAVSLRHSVSSILLKLKKAEGSSAESIAALAKVDIVKQRMEAAYETLQDAAGLTQLSSTVEDVFASGDLPKAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDSMVQPRLTDALSNRKVEVAQDLRGILIRIGRFKSLEAHYTKVHLKPIRQLWEDFDSKQRTNKLANEKNEVERLLSSNDFQSILPTISFSSWLPSFYDELLLYLEQEWKWCMIAFLDDYKTLVPKLLIETMATIGSNFVSRINLATGDVVAETKALAKGILDILSGDMQKGIKIQSKHLEALIELHNMTGTFARNVQHLFSESNLPVLLDTLKAVYLPYESFKQRYGQMERVILSSEIAGVDLRGAVVRGVGAQGIELSETVRRMEESIPQVILFLDEAVERCISFTGGSEIDELILALDDIMLQYISTLQETLKSLRAVCGVDTGDGGGTKKEMVSDRKEGTHNARKVDLMSNEEEWSIVQGALQILTVADCLTSRSAVFEASLKATLARLSTSLSLSVFGSNLDQNQSHVASDDGNGESSMIGRAALDVASVRLVDVPEKARRLFNLLDQSKDPRFHALPLASQRVAAFADTVNELVYDVLISKVRQRLSDVSRLPIWSAVEEPSAFPLPSFNAYPQAYVTSVGEYLLTLPQQLEPLAEGISSSDPNADEAQFFATEWMFKVAEGATALYMEQLRGIQYITDRGAQQLSADIEYLSNVLSALSMPIPPILATFHSCLSTPRDQLKDFVKSDAGNQLDLPTANLVCKIRRIFSWQEAENRVGS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0573 847 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 3 835 IPR019335 GO:0006886|GO:0017119
Vvi16g0573 847 Pfam Golgi complex component 7 (COG7) 4 834 IPR019335 GO:0006886|GO:0017119
Vvi16g0573 847 Coils Coil 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0573 Vvi-Chr16 11544324 11556663 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0573 K20294 - vvi:100243313 1553.5