Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0567 ATGGCATCATCGATACCGTCTTCAAGCTTTGGCACTCCTCCTTCTATACTGAGTATTCAGGAGCTGGCCAAACAGCCCATGGCTACAGTGCCACAAATCTTTCTCTTGGAGGATCAGGAGCGTCCCGTTCTCCGAGAGAATGCTGCCCTGCCCGATATCCCCACCATCGACATGAAACGTTTGATTATGAGTGAAACCACAGATTTTGAACTAGACAAGTTGCACTCAGCTTGCAAAGAATGGGGCTTCTTTCAGGGGCAAACAGACCCTTATATTTCATGGACTTTGTCCTGTTTTTCTAATAAGATCATAGAAACTAACAATTGGGTTGATGCACAGTTGGTGAATCATGGAGTCAGTTCTTCCCTTGTGGAGGACCTGAAACATGAGATTGTAGAATTTTACAAGCTTCCCTTGGAAGAGAAGATGAAATATAAGACGCCAGCTGATGCTGAAGGATATGGGCCGTCTATAATCCGATCAGAAGATCAAAAACTTGACTGGGGTGATAGGTTTTACATGTTAACCAACCCTATTCATAGGAGGAAGCCACATCTATTGCCACAGCTCCCCCCGTCACTAAGGGATAACTTGGAATTGTACATATCAGACTCGCAGAAACTCGCCATGAGACTTCTAGGGTTGATGGCTAAAGCTATGAAGCTGGACAAGAGAGAAATGGAAGAGTTGTTTGATGATGGAAAGCAGGCAGTGAGGATGACTTACTATCCTCCATGTCCACAATCAGAGATGGTTATGGGCATTGCGCCTCACTCCGATGCTACAGGCATCACCATTCTTCTTCAAGTTAATGAAGTAGATGGCCTCCAAATAAAGAAAGATGGGGTTTGGATTCCTGTAAACGTCCTCCCAGATGCACTTGTAGTTAATGTTGGAGACATTCTAGAGATTGTGAGCAATGGGATGTATACTAGCATTGAGCATAGGGCAACTGTAAATAGTACAAAAGAGAGGATCTCTATTGCCATGTTTTTCAGCCCCAAATTTTCAGCTGAGATTGGACCTGCTGCTGGTTTGATAACTCCTCAAAACCTCCCAGTGTTCAAGCGAATTGGCATGGAAAAATACTACGAAGATTTCTTCTCTCGCAAGCTGGATGGAAAATCTTACCTGGAGCATATGAAGATAAAAAAATGA 1158 0.437 MASSIPSSSFGTPPSILSIQELAKQPMATVPQIFLLEDQERPVLRENAALPDIPTIDMKRLIMSETTDFELDKLHSACKEWGFFQGQTDPYISWTLSCFSNKIIETNNWVDAQLVNHGVSSSLVEDLKHEIVEFYKLPLEEKMKYKTPADAEGYGPSIIRSEDQKLDWGDRFYMLTNPIHRRKPHLLPQLPPSLRDNLELYISDSQKLAMRLLGLMAKAMKLDKREMEELFDDGKQAVRMTYYPPCPQSEMVMGIAPHSDATGITILLQVNEVDGLQIKKDGVWIPVNVLPDALVVNVGDILEIVSNGMYTSIEHRATVNSTKERISIAMFFSPKFSAEIGPAAGLITPQNLPVFKRIGMEKYYEDFFSRKLDGKSYLEHMKIKK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0567 385 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 234 334 IPR005123 -
Vvi16g0567 385 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 51 363 - -
Vvi16g0567 385 SUPERFAMILY Clavaminate synthase-like 17 375 - -
Vvi16g0567 385 Pfam 2OG-Fe(II) oxygenase superfamily 236 334 IPR044861 -
Vvi16g0567 385 Gene3D - 14 374 IPR027443 -
Vvi16g0567 385 FunFam Protein SRG1 14 374 - -
Vvi16g0567 385 Pfam non-haem dioxygenase in morphine synthesis N-terminal 113 178 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0567 Vvi-Chr16 11462797 11464295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0567 19 383 Glycosyltransferase AT5G59530 29.333 1.21e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0567 - - vvi:100245014 726.857