Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0555 ATGGCTGTACGGTCCTTTGAACAGCTTCTTAGCTTTCTTGTGCTTTTGCTGCTATGTGTCAAACCTGGCCTTGGAACCACTCTGGAGAAAGTTGGGTGCATAGAGGGGGAGAGACAAGCTCTCCTTAAGTTCAAACGTGGCCTCGTTGATGATTATGGCCTTCTTTCCTTGTGGGGAGATGAACAAGATAAAAGAGATTGTTGCCGATGGAGAGGAGTTCGGTGTAATAATCGATCAGGTCACGTCATCATGCTTCGTCTTCCTGCCCCGCCGATCGATGAATACGGTAATTACCAGTCTCTAAGAGGTGAGATAAGTCCTTCATTGCTTGAATTGGAGCACTTGAATCATTTGGATCTCAGCTATAATGATTTTGAAGGCAAGCAAATACCTTCATTCCTTGGTTCTCTCAGCAAAATGCAGTACCTCAATCTCTCTTATGCCAAATTCGCTAAAACTATTCCCACTCAACTCGGAAATCTTTCCAACTTGCTTTCCCTTGACCTCAGCGGTAGTTATTATGAGTTGAATTCTGGGAACCTGGAGTGGCTTTCTCATCTTTCGTCTTTAAGATTCCTTGACTTGAGTCTGGTTGATCTTGGTGCAGCCATCCACTGGTCACAAGCAATCAATAAACTCCCTTCTCTCGTTCACTTAAACTTATATGGTTGTGGCCTCCCTCCCTTCACCACTGGGTCTCTTTTCCATGCTAATTCCTCTGCCCCTCTTGTTTTCCTTGATCTTTCCAACAATTATCTTATCAATTCTTCAATATACCCATGGTTGTTCAACTTCAGTACCACCCTTGTTCATCTGGATCTCTCTAGCAATGATCTAAATGGTTCGATTCCCGATGCTTTTGGGAACATGATTTCTCTTGCATATCTCAACCTCAGAGACTGTGCATTTGAAGGTGAGATTCCGTTTGCATTTGGGGGCATGAGTGCCCTTGAATATCTTGATATCTCTGGACATGGACTTCATGGTGAGATTCCAGACACATTTGGGAACATGACTTCTCTTGCATATCTTGCTCTCTCTTCCAATCAACTTCAAGGAGGGATTCCGGACGCAGTTGGAGACCTAGCTTCTCTTACATATCTTGAACTCTTTGGCAATCAACTTAAAGCTCTTCCCAAGACATTTGGTAGAAGCCTTGTTCATGTTGATATCTCCTCCAATCAAATGAAGGGTTCAATTCCAGACACATTTGGTAACATGGTTTCTCTTGAAGAACTCTTTCTCTCACACAATCAACTTGAAGGTGAGATTCCAAAATCCTTTGGTAGAAGCCTTGTTATTCTTGATCTCTCATCGAATCGACTACAGGGCTCAATTCCAGATACAGTTGGGGACATGGTTTCTCTTGAAAGGCTCTCTCTCTCTCTGAATCAACTCCAAGGTGAGATTCCAAAATCCTTCAGTAATTTATGTAATCTGCAAGAAGTAGAGTTGGATAGCAACAATCTCACTGGACAACTTCCACAAGACTTGTTGGCTTGCGCAAATGGTACATTACGGACTTTGTCTTTGTCTGATAATCGGTTCAGAGGATTAGTTCCTCATCTTATTGGATTTTCATTCTTGGAAAGGTTATATCTTGATTATAATCAACTAAATGGAACTTTACCTGAAAGTATTGGGCAACTAGCCAAGCTTACTTGGTTTGATATTGGTTCAAATTCATTGCAAGGTGTCATCTCTGAAGCTCATTTCTTTAATCTATCCAACTTGTATCGTTTAGACTTATCTTACAACTCTCTCACTTTCAACATGAGCTTGGAGTGGGTCCCTCCATCTCAATTGGGTTCTCTACAATTAGCCTCCTGCAAATTGGGACCTCGTTTTCCTAGCTGGCTGCAAACTCAAAAGCATTTGACAGAGCTTGATCTCTCCAATTCTGACATTTCAGATGTCCTCCCAGACTGGTTTTGGAATTTAACTTCCAATATCAATACCTTAAATATTTCCAACAATCAGATCAGAGGGGTCTTACCCAATTTATCATCACAATTTGGTACTTATCCTGACATTGATATAAGCTCAAACAGTTTTGAGGGTTCAATACCACAACTTCCTTCTACTGTGACAAGGTTGGATCTTTCCAATAACAAGTTATCAGGGTCCATTTCTTTGTTGTGTATAGTTGCTAATTCGTATTTGGTCTATCTTGACCTCTCAAACAACTCATTAACAGGGGCCCTGCCCAATTGTTGGCCACAGTGGGCAAGTTTGGTAGTCCTTAATTTGGAAAATAATAAATTTTCTGGGAAGATTCCAAATTCATTGGGCTCTTTGCAATTGATTCAAACATTGCATTTGCGCAGCAACAATTTAACTGGAGAATTGCCTTCATCTTTGAAGAATTGTACAAGTTTAAGGCTTATTGATTTGGGAAAAAATAGGTTATCAGGGAAAATCCCTCTATGGATAGGAGGAAGCCTTCCAAATTTGACTATTCTAAGCCTACGATCTAATCGATTCAGTGGAAGTATATGTTCAGAGCTATGTCAATTGAAAAAAATTCAGATATTAGACCTCTCAAGTAATGATATATCAGGTGTTATACCAAGATGCCTTAATAATTTCACTGCCATGACTAAGAAAGGGAGTTTGGTTGTTGCTCATAATTATTCATTTGGGTCTTTTGCTTATAAAGACCCACTAAAGTTTAAGAATGAGTCCTACGTTGATGAGGCATTGATTAAATGGAAAGGAAGTGAATTTGAGTATAAGAATACTCTTGGACTTATAAGGAGTATTGATCTTTCAAGAAACAATCTATTGGGGGAGATTCCAAAAGAGATTACTGATCTTCTTGAGTTAGTTTCATTAAACTTATCAAGAAACAATTTGACTGGACTGATCCCTACAACAATTGGTCAATTGAAGTCATTAGAGATTCTTGATTTGTCTCAAAATGAACTTTTTGGAGAAATTCCAACTAGCCTTTCGGAAATAAGTCTTCTTAGTGTCTTAGATCTCTCTAACAATAACTTATCTGGTAAAATTCCGAAAGGTACTCAACTTCAAAGCTTCAATTCTTACTCTTATAAGGGAAATCCTACACTTTGTGGACTACCCCTTTTGAAAAAGTGTCCAGAAGATGAAATGAAGCAAGATTCTCCCACTCGTAGCATTGAAGACAAAATTCAGCAAGATGGAAATGACATGTGGTTTTATATTAGCATTGCTCTTGGATTCATTGTTGGATTTTGGGGAGTGTGTGGAACTTTACTACTCAACAACTCATTGAGATATGCCTATTTCCACTTCTTGAATAAAATCAAAGATTGGTTTTATGTGACGATAGCAATAAATATGGCCAAAGTAAGAAGAAGCCTCCAAAGCTAA 3354 0.3924 MAVRSFEQLLSFLVLLLLCVKPGLGTTLEKVGCIEGERQALLKFKRGLVDDYGLLSLWGDEQDKRDCCRWRGVRCNNRSGHVIMLRLPAPPIDEYGNYQSLRGEISPSLLELEHLNHLDLSYNDFEGKQIPSFLGSLSKMQYLNLSYAKFAKTIPTQLGNLSNLLSLDLSGSYYELNSGNLEWLSHLSSLRFLDLSLVDLGAAIHWSQAINKLPSLVHLNLYGCGLPPFTTGSLFHANSSAPLVFLDLSNNYLINSSIYPWLFNFSTTLVHLDLSSNDLNGSIPDAFGNMISLAYLNLRDCAFEGEIPFAFGGMSALEYLDISGHGLHGEIPDTFGNMTSLAYLALSSNQLQGGIPDAVGDLASLTYLELFGNQLKALPKTFGRSLVHVDISSNQMKGSIPDTFGNMVSLEELFLSHNQLEGEIPKSFGRSLVILDLSSNRLQGSIPDTVGDMVSLERLSLSLNQLQGEIPKSFSNLCNLQEVELDSNNLTGQLPQDLLACANGTLRTLSLSDNRFRGLVPHLIGFSFLERLYLDYNQLNGTLPESIGQLAKLTWFDIGSNSLQGVISEAHFFNLSNLYRLDLSYNSLTFNMSLEWVPPSQLGSLQLASCKLGPRFPSWLQTQKHLTELDLSNSDISDVLPDWFWNLTSNINTLNISNNQIRGVLPNLSSQFGTYPDIDISSNSFEGSIPQLPSTVTRLDLSNNKLSGSISLLCIVANSYLVYLDLSNNSLTGALPNCWPQWASLVVLNLENNKFSGKIPNSLGSLQLIQTLHLRSNNLTGELPSSLKNCTSLRLIDLGKNRLSGKIPLWIGGSLPNLTILSLRSNRFSGSICSELCQLKKIQILDLSSNDISGVIPRCLNNFTAMTKKGSLVVAHNYSFGSFAYKDPLKFKNESYVDEALIKWKGSEFEYKNTLGLIRSIDLSRNNLLGEIPKEITDLLELVSLNLSRNNLTGLIPTTIGQLKSLEILDLSQNELFGEIPTSLSEISLLSVLDLSNNNLSGKIPKGTQLQSFNSYSYKGNPTLCGLPLLKKCPEDEMKQDSPTRSIEDKIQQDGNDMWFYISIALGFIVGFWGVCGTLLLNNSLRYAYFHFLNKIKDWFYVTIAINMAKVRRSLQS* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0555 1117 SUPERFAMILY L domain-like 687 1030 - -
Vvi16g0555 1117 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 911 1033 - -
Vvi16g0555 1117 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine rich repeat 316 375 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine rich repeat 430 490 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine rich repeat 942 1000 IPR001611 GO:0005515
Vvi16g0555 1117 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 571 668 - -
Vvi16g0555 1117 Pfam Leucine Rich Repeat 721 738 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine Rich Repeat 841 863 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine Rich Repeat 744 766 IPR001611 GO:0005515
Vvi16g0555 1117 SUPERFAMILY RNI-like 385 664 - -
Vvi16g0555 1117 SMART LRR_sd22_2 453 479 - -
Vvi16g0555 1117 SMART LRR_sd22_2 693 714 - -
Vvi16g0555 1117 SMART LRR_sd22_2 839 865 - -
Vvi16g0555 1117 SMART LRR_sd22_2 963 989 - -
Vvi16g0555 1117 SMART LRR_sd22_2 407 428 - -
Vvi16g0555 1117 SMART LRR_sd22_2 550 577 - -
Vvi16g0555 1117 SUPERFAMILY RNI-like 100 424 - -
Vvi16g0555 1117 Gene3D Ribonuclease Inhibitor 34 203 IPR032675 -
Vvi16g0555 1117 Pfam Leucine Rich repeat 624 639 IPR001611 GO:0005515
Vvi16g0555 1117 Pfam Leucine Rich repeat 266 281 IPR001611 GO:0005515
Vvi16g0555 1117 Gene3D Ribonuclease Inhibitor 385 593 IPR032675 -
Vvi16g0555 1117 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 236 505 - -
Vvi16g0555 1117 PRINTS Leucine-rich repeat signature 721 734 - -
Vvi16g0555 1117 PRINTS Leucine-rich repeat signature 963 976 - -
Vvi16g0555 1117 Gene3D Ribonuclease Inhibitor 204 384 IPR032675 -
Vvi16g0555 1117 Gene3D Ribonuclease Inhibitor 599 1042 IPR032675 -
Vvi16g0555 1117 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 674 899 - -
Vvi16g0555 1117 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
Vvi16g0555 1117 PANTHER LRR RECEPTOR-LIKE KINASE 243 358 - -
Vvi16g0555 1117 SMART LRR_typ_2 477 501 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 407 431 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 575 604 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 213 236 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 526 550 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 453 476 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 112 137 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 963 987 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 939 962 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 624 646 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 647 671 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 815 839 IPR003591 -
Vvi16g0555 1117 SMART LRR_typ_2 362 385 IPR003591 -
Vvi16g0555 1117 FunFam Receptor-like protein EIX1 33 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0555 Vvi-Chr16 11176060 11179413 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0555 16 784 Receptor kinase-like Gene Family AT4G13920 27.231 2.84e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0555 - K13466 vvi:104882119 2170.59