Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0550 ATGAGCTTTGAGTGGGTTCCTCCATTTCAACTGTATTCTCTACGATTAGCCTCCTGCAAATTGGGACCTCATTTTCCTAGTTGGCTTCGTACTCAAAACTTGTTGATAGAGCTTGATATCTCCAATTCCGAAATTTCAGATGTCCTCCCAGACTGGTTTTGGAATGTAACCTCAACTATTTCTACCTTGAGTATTTCCAACAATCGGATCAAAGGGACCTTACAGAATTTACCATTAAACTTTGGTTCTTTATCTAACATAGATATGAGCTCAAACTATTTTGAGGGTTTAATACCACAACTTCCTTCTGACGTGCGATGGTTGGATCTCTCCAATAACAAGTTATCGGGGTCCATTTCTTTATTATGTGCAGTTGTTAATCCACCACTTGTCCTACTTGACCTCTCAAACAACTCATTGACGGGAGGGCTACCCAATTGTTGGGCGCAATGGGAAAGATTGGTAGTTCTTAATTTGGAAAATAACAGATTTTCTGGGCAAATTCCAAATTCATTTGGCTCCTTGCGATCAATTCGAACACTACATTTGCGCAACAACAATTTAACTGGAGAATTGCCTTTGTCTTTTAAGAATTGTACAAAGTTGAGGTTCATTGATTTGGGAAAAAATAGGTTATCAGGAAAAATACCAGAATGGATTGGAGGAAGCCTTCCAAATTTGATTGTTCTAAACCTAGGATCTAATAGATTCAGTGGAGTTATATGTCCAGAGCTATGCCAATTGAAAAATATTCAAATATTGGACCTCTCCAACAACAATATATTAGGTGTTGTACCGAGATGTGTTGGTGGTTTCACTGCCATGACTAAGAAAGGGAGCTTGGTCATTGCTTATAATTATTCATTTACACAGAATGGTCGTTGTAGAGATGACGGATGCATGCCTATAAATGCCTCTTATGTTGATAGGGCAATGGTTAGATGGAAAGAAAGAGAATTTGATTTTAAAAGTACCCTTGGGCTTGTAAAGAGTATTGATCTTTCAAGCAACAAACTATCGGGGGAAATTCCAGAAGAAGTAATTGATCTTATAGAATTAGTTTCATTAAACTTATCAAGGAACAATTTGACTAGACTGATCCCTACAAGAATTGGTCAATTGAAATCATTGGAGGTTCTTGATTTGTCTCAAAATCAACTCTTTGGTGAAATTCCAGCTAGCCTTGTTGAAATAAGTGATCTAAGTGTCTTAGATCTCTCTGACAACAACTTGTCCGGTAAAATTCCACAAGGTACTCAACTTCAAAGCTTCAATATTGATTCCTACAAGGGAAATCCTGCACTCTGTGGATTGCCTCTTCTGAAAAAGTGTTCTGAAGATAAAATAAAGCAAGGTTCTCCCACTTATAACATTGAAGACAAAATTCAGCAAGATGGAAATGACATGTGGTTTTATATTAGCGTTGCTCTTGGATTCATTGTTGGATTTTGGGGAGTGTATTACAAAGGAGTTTTCAAAGCTAAATGGACTGCAACTCTTGTTCTTGCAATATTAGCATGGTTGAATGCAAATCGTCGTGTCCTTCCTTCTATGATAGATTTTGGGATGTAA 1572 0.3734 MSFEWVPPFQLYSLRLASCKLGPHFPSWLRTQNLLIELDISNSEISDVLPDWFWNVTSTISTLSISNNRIKGTLQNLPLNFGSLSNIDMSSNYFEGLIPQLPSDVRWLDLSNNKLSGSISLLCAVVNPPLVLLDLSNNSLTGGLPNCWAQWERLVVLNLENNRFSGQIPNSFGSLRSIRTLHLRNNNLTGELPLSFKNCTKLRFIDLGKNRLSGKIPEWIGGSLPNLIVLNLGSNRFSGVICPELCQLKNIQILDLSNNNILGVVPRCVGGFTAMTKKGSLVIAYNYSFTQNGRCRDDGCMPINASYVDRAMVRWKEREFDFKSTLGLVKSIDLSSNKLSGEIPEEVIDLIELVSLNLSRNNLTRLIPTRIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCSEDKIKQGSPTYNIEDKIQQDGNDMWFYISVALGFIVGFWGVYYKGVFKAKWTATLVLAILAWLNANRRVLPSMIDFGM* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0550 523 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 322 444 - -
Vvi16g0550 523 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 31 288 - -
Vvi16g0550 523 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Vvi16g0550 523 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Vvi16g0550 523 PANTHER LRR RECEPTOR-LIKE KINASE 4 499 - -
Vvi16g0550 523 SMART LRR_typ_2 175 198 IPR003591 -
Vvi16g0550 523 SMART LRR_typ_2 350 373 IPR003591 -
Vvi16g0550 523 SMART LRR_typ_2 374 398 IPR003591 -
Vvi16g0550 523 SMART LRR_typ_2 248 271 IPR003591 -
Vvi16g0550 523 SUPERFAMILY L domain-like 9 119 - -
Vvi16g0550 523 Gene3D Ribonuclease Inhibitor 2 448 IPR032675 -
Vvi16g0550 523 ProSiteProfiles Leucine-rich repeat profile. 400 422 IPR001611 GO:0005515
Vvi16g0550 523 Pfam Leucine Rich Repeat 250 271 IPR001611 GO:0005515
Vvi16g0550 523 Pfam Leucine Rich Repeat 132 147 IPR001611 GO:0005515
Vvi16g0550 523 PRINTS Leucine-rich repeat signature 374 387 - -
Vvi16g0550 523 PRINTS Leucine-rich repeat signature 130 143 - -
Vvi16g0550 523 SUPERFAMILY L domain-like 126 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0550 Vvi-Chr16 11038465 11040336 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0550 8 501 Receptor kinase-like Gene Family AT2G33020 32.475 2.10e-67 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0550 - K13466 vvi:100253626 951.044