Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0542 ATGAGTTCCCTTGAATATCTTGATCTCTCTTCGAATCAACTGCAGGGCTCAATTCCAGATACAGTTGGGAAGATGGTTTTACTTTCCCATCTTGATCTCTCTTTCAATCAACTGCAGGGCTCAATTCCAGATACAGTTAGGAAGATGGTTTTACTTTCACATCTTGATCTCTCTGTCAATCAACTGCAGGGCTCAATTCCAGATACAGTTGGGAAGATGGTTTTACTTTCACATCTTGATCTCGTTGTCAATCAACTGCAGGGCTCAATTCCAGATACAGTTGGGAAAATGGTTTTACTTTCACATCTTTTTCTATCTTACAATCAACTGCAGGGCTCAATTCCAGATACAGTTGGGAATATGGTTTTACTTTCACATCTTGATCTCTCTAGCAATCAACTGCGGGGCTCAATTCCAGATACAGTTGGGAATATGGTTTTACTTTCACATCTTGATCTCTCTCGCAATCAATTGCAGGGCTCCATTCCATATACAGTTGGGAACATGGTTTCTCTTGAAAACCTTTATCTCTCTCAGAATCATCTTCAAGGTGAGATTCCAAAATCCTTGAGTAATTTATGTAACTTACAAGCATTAAAGTTGGATAGAAACAATCTCTCTGGACAGCTTGCACCAGACTTTGTGGCCTGTGCAAATGACACATTAAAGACTCTGTCTTTATCAGATAACCAGTTCAATGGATCACTGGCCAAACTTGAATCCTTGGATATTGCCTCAAATTCATTGCAAGGCACTATCTCTGAAGCCCATCTCTTTAATCTATCCCAGTTGTCCTATTTAAACTTATCTCCCAACTCTCTCACTTTCAACATGAGCTTGGAGTGGGTTCCTCCATTTCAACTGTTTGATCTACTATCAGCCTCCTGCAAATTGGGACCTCATTTTCCTAGTTGGCTTCGTACTCAAAACCGGTTGAGTGAGCTTGATATCTCCAATTCTGAAATTTCAGATGTCCTCCCAGACTGGTTTTGGAATGTAACCTCAACTGTCAATACCTTGAGTATTTCCAACAATCGGATCAAAGGAACCTTACCCAATTTATCATCAACATTTGAACGTTTTTCTAACATAGATATGAGCTCAAACTGTTTTGAGGGTTCAATACCACAACTTCCTTATGATGTGCAATGGTTGGATCTCTCCAATAACAAGTTATCGAGGTCCATTTCTTTATTATGTACAGTTGGTACTGAGTTACTTCTACTTGACCTCTCAAACAACTCGTTGTCGGGAGGGCTGCCCAATTGTTGGGCGCAGTGGAAAAGCTTGGCAGTCCTTAATTTGGAAAATAACAGATTTTCTGGGCAAATTCCAAATTCATTTGGCTCCTTGCGATCAATTCGAACACTACATTTGCGCAACAACAATTTAACTGGAGAATTGCCTTTGTCTTTTAAGAATTGTACAAGTTTGAGGTTCATTGATTTGGCAAAAAATAGGTTATCAGGAAAAATACCAGAATGGATTGGAGGAAGCCTCCCAAATCTGATTGTTCTAAACCTAGGATCTAATAGATTCAGTGGAGGTATATCTCCAAAGCTATGCCAATTGAAAAATATTCAAATATTGGACCTCTCTAGCAACAATATGTTAGGTGTTGTACCGAGATGTGTTGGTAGTTTCATTGCCATGACTAAGAAAGGGAGCTTGGTCATTGCTCATAATTATTCATTTACAGACTATGATAATTGTAGTTATTTCAATTGCATGCCTACAAATGCCTCTTATGTTGATAGGGCATTGGTTAAATGGAAAGCAAGAGAATTTGATTTTAAAAGTACCCTTGGGCTTGTAAAGAGTATTGACCTTTCAAGCAACAAACTATCGGGGGAAATTCCAGAAGAAGTAATTGATCTTGTAGAATTAGTTTCATTAAACTTATCAAGGAACAATTTGACTAGACTGATTCCTGCAAGAATTGGTCAATTGAAATCATTGGAGGTTCTTGATTTGTCTCGAAATCAACTCTTTGGTGAAATTCCAGCTAGCCTTGTTGAAATAAGTGATCTAAGTGTCTTAGATCTCTCTGACAACAACTTGTCCGGTAAAATTCCACAAGGTACTCAACTTTAA 2094 0.3849 MSSLEYLDLSSNQLQGSIPDTVGKMVLLSHLDLSFNQLQGSIPDTVRKMVLLSHLDLSVNQLQGSIPDTVGKMVLLSHLDLVVNQLQGSIPDTVGKMVLLSHLFLSYNQLQGSIPDTVGNMVLLSHLDLSSNQLRGSIPDTVGNMVLLSHLDLSRNQLQGSIPYTVGNMVSLENLYLSQNHLQGEIPKSLSNLCNLQALKLDRNNLSGQLAPDFVACANDTLKTLSLSDNQFNGSLAKLESLDIASNSLQGTISEAHLFNLSQLSYLNLSPNSLTFNMSLEWVPPFQLFDLLSASCKLGPHFPSWLRTQNRLSELDISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSSTFERFSNIDMSSNCFEGSIPQLPYDVQWLDLSNNKLSRSISLLCTVGTELLLLDLSNNSLSGGLPNCWAQWKSLAVLNLENNRFSGQIPNSFGSLRSIRTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPEWIGGSLPNLIVLNLGSNRFSGGISPKLCQLKNIQILDLSSNNMLGVVPRCVGSFIAMTKKGSLVIAHNYSFTDYDNCSYFNCMPTNASYVDRALVKWKAREFDFKSTLGLVKSIDLSSNKLSGEIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSRNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0542 697 PANTHER LRR RECEPTOR-LIKE KINASE 123 210 - -
Vvi16g0542 697 SMART LRR_sd22_2 236 263 - -
Vvi16g0542 697 SMART LRR_sd22_2 1 22 - -
Vvi16g0542 697 SMART LRR_sd22_2 650 679 - -
Vvi16g0542 697 SMART LRR_sd22_2 169 195 - -
Vvi16g0542 697 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 598 695 - -
Vvi16g0542 697 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 144 236 - -
Vvi16g0542 697 FunFam Leucine-rich repeat receptor protein kinase EMS1 71 143 - -
Vvi16g0542 697 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 257 355 - -
Vvi16g0542 697 Pfam Leucine rich repeat 100 158 IPR001611 GO:0005515
Vvi16g0542 697 Pfam Leucine rich repeat 629 687 IPR001611 GO:0005515
Vvi16g0542 697 Pfam Leucine rich repeat 429 488 IPR001611 GO:0005515
Vvi16g0542 697 SUPERFAMILY RNI-like 172 396 - -
Vvi16g0542 697 FunFam LRR receptor-like serine/threonine-protein kinase 1 70 - -
Vvi16g0542 697 SUPERFAMILY L domain-like 380 692 - -
Vvi16g0542 697 PRINTS Leucine-rich repeat signature 4 17 - -
Vvi16g0542 697 PRINTS Leucine-rich repeat signature 650 663 - -
Vvi16g0542 697 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515
Vvi16g0542 697 Pfam Leucine Rich Repeat 3 22 IPR001611 GO:0005515
Vvi16g0542 697 SUPERFAMILY L domain-like 2 232 - -
Vvi16g0542 697 SMART LRR_typ_2 25 48 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 500 524 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 650 674 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 626 649 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 1 24 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 451 474 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 49 73 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 145 168 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 97 120 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 121 144 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 236 261 IPR003591 -
Vvi16g0542 697 SMART LRR_typ_2 169 193 IPR003591 -
Vvi16g0542 697 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 378 563 - -
Vvi16g0542 697 Gene3D Ribonuclease Inhibitor 222 697 IPR032675 -
Vvi16g0542 697 Gene3D Ribonuclease Inhibitor 1 213 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0542 Vvi-Chr16 10934955 10937138 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0542 4 697 Receptor kinase-like Gene Family AT2G32680 33.287 8.19e-93 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0542 - K13466 vri:117933252 1060.44