Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0539 ATGATTTCTCTTGCATATCTGGACCTTAGATATTGTGCATTTGAAGGTGAGATTCTGTTCGCATTTGGGGACATGAGAGCCCTTGAATATCTTGATATCTCTGGACATGGGCTTCATGGTGAGATTCCAAACAAATTTGGGAACATGACTTTTCTTACATATATTGCTCTCTTTTCCAATCAACTTCAAGAAGGGATTCTGGATGCAATTGGAGACCTGGCTTCTCTTACATATCTTGAACTCTTTGTCAATCAACTTAAAGCTCTTCCCAAGACATTCGGTACCATCTCTGAAGCTCATCTCTTTAATCTATCCAACTTGGCCCATTTAGGCTTATCTTCCAACTCTCTCACTTTCAACATGCGCTTGGAGTGGGTTCCTCCATTTCATCTGGTTTCTCTACTATTAGCCTCCTGCAAATTGGGACCTCCTTTTCCTAGATGGCTTCAAACTCAAAAGCATTTGACAGAGTTTGATCTCTTCAATTCTGACATTTCAGATATCCTCCTAGACTGGTTTTGGAATTTAACTTTCGAATGTCCAACGAAGTACTTTAAGAATGAGTCATACGTTGATGAGGCATTGTTTAATTGGAAAGAAAGTGAATTTGAATACAAGAATATTCTTGGACTTATAAAGAGCATTGATATTTCAAGCAACAATCTATTTGGGGAGATTCCAAAAGAGATTACTGATCTTCTTGAATTAGTTTCATTAAACGTATCAAGAAACAATTTGACTACATTGATCCCTGCAATGATTGGTCAATTGAAATCCTTAGAGGTCCTTGATTTGTTTCAAAATCAACTTTTTGGTGAAATTCCAACTAGCCCTTCGAAAATAAGCAATCTTAGTGTCTTAGATCTCTCTAACAATAATTATTTGGTAAAATTCCACAAGGTACTCAACTTCAAAGCTTCAATACTTCCTCTTATAAGGGAAATCCTACACTTTGTGGATTACCTTTTCTGA 972 0.3673 MISLAYLDLRYCAFEGEILFAFGDMRALEYLDISGHGLHGEIPNKFGNMTFLTYIALFSNQLQEGILDAIGDLASLTYLELFVNQLKALPKTFGTISEAHLFNLSNLAHLGLSSNSLTFNMRLEWVPPFHLVSLLLASCKLGPPFPRWLQTQKHLTEFDLFNSDISDILLDWFWNLTFECPTKYFKNESYVDEALFNWKESEFEYKNILGLIKSIDISSNNLFGEIPKEITDLLELVSLNVSRNNLTTLIPAMIGQLKSLEVLDLFQNQLFGEIPTSPSKISNLSVLDLSNNNYLVKFHKVLNFKASILPLIREILHFVDYLF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0539 323 Gene3D Ribonuclease Inhibitor 1 306 IPR032675 -
Vvi16g0539 323 PANTHER LRR RECEPTOR-LIKE KINASE 66 179 - -
Vvi16g0539 323 Pfam Leucine rich repeat 213 270 IPR001611 GO:0005515
Vvi16g0539 323 SUPERFAMILY RNI-like 4 296 - -
Vvi16g0539 323 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 207 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0539 Vvi-Chr16 10850381 10852613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0539 13 62 Receptor kinase-like Gene Family AT3G28890 46.000 1.72e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0539 - K13466 vri:117933818 206.453