Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0538 ATGCCAAGCTACCAAGAGTCGGGTTATCAGTTATCAGGAAAAATGCCAGAATGGATTGGAGAAAGCCTCCCAAATCTAATTGTTCTAAACCTAGGATCTAATAGATTCAGTGGAGGGATATGTCTAGAGCTCTGTCGGTTGAAAAATATTCAAATATTGGACCTCTCTAGCAACAATATGTTAGGTGTTATACTGAGATGTTTTGGTGGTTTCACTACCATGACTAAGAAAGGGAGCTTGGTGATTGCTCATAATTATTGGTTTGAACAGTTTGGTGATGGCTGCTTTGATGATGGCGGGATATTTATGAACTCCTCTTACGTTGATAGGGCATTGGTTAGATGGAAAGGAAGAGAATTTGAGTATAAAAGTACCCTTGGGCTTGTAAAGAGTATTGATCTTTCAAGCAACAAACTATCGGGGGAAATTCCAGAAGAAGTAATTGATCTTGTAGGATTAGTTTCATTAAACTTATCAAGGAACAATTTTATTGGACTGATCCCTACAATAATTGGTCAATTGAAATCATTAGAGGTTTTTTATTTGTCTCAAAATCGAATTTTTGGCAAAATTCCAACTAGCCTTGTTGAAATAAGTGGTCTAAGTGTCTTAGATCTCTCTAACAACAACTTTTCCAGTAAAATTCCACAAGGTACTCAACTTCAAAGCTTCAATATTGATTCCTACAAGGGAAATCCTACACTTTGTGAATTGCCTCTTTCGAAAAAGTGTTCTAAAGATAAAATAAAACAAGATTGTCTCATTCATAACATTGAAGACAAAATTCAGCAAGATGGAAATGACATGTGGTTTTATGTTAGTGTTGCTCTTGGATTCATTGTTGGATTTTGGGGAGTGTGTGGAACTTTACTACTCAATAACTCATGGAGATATGCCTATTTCCAATTCTTGAATAAAATAAAAGATTGGTTGTACGTGATTATAGCAATAAATAGGGCTAGATTACAAATGAGTCTTCAAAGCTAA 987 0.3526 MPSYQESGYQLSGKMPEWIGESLPNLIVLNLGSNRFSGGICLELCRLKNIQILDLSSNNMLGVILRCFGGFTTMTKKGSLVIAHNYWFEQFGDGCFDDGGIFMNSSYVDRALVRWKGREFEYKSTLGLVKSIDLSSNKLSGEIPEEVIDLVGLVSLNLSRNNFIGLIPTIIGQLKSLEVFYLSQNRIFGKIPTSLVEISGLSVLDLSNNNFSSKIPQGTQLQSFNIDSYKGNPTLCELPLSKKCSKDKIKQDCLIHNIEDKIQQDGNDMWFYVSVALGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAINRARLQMSLQS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0538 328 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 122 244 - -
Vvi16g0538 328 Pfam Leucine rich repeat 153 211 IPR001611 GO:0005515
Vvi16g0538 328 Gene3D Ribonuclease Inhibitor 6 253 IPR032675 -
Vvi16g0538 328 PANTHER OS10G0469600 PROTEIN 10 303 - -
Vvi16g0538 328 Pfam Leucine Rich Repeat 49 71 IPR001611 GO:0005515
Vvi16g0538 328 SUPERFAMILY L domain-like 10 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0538 Vvi-Chr16 10810816 10811802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0538 10 311 Miscellaneous Gene Families AT1G74190 33.333 1.11e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0538 - K13466 vvi:100253626 510.76