LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0537	ATGAGTTCCCTTGAATATCTTAATCTCCATTCGAGTGAACTTGATGATGAGATTCCGGATACAATTGGAGACATGGGATCACTTGCATATCTTGATCTCTCTTGCAATCAACTGCAGGGCTCAATTCCAAATACAATTAGGAAGATGGTTTTACTTTCACATCTTGATCTCTTTCGCAAGCAACTGCGGGGCTCAATTCCAGATACAGTTGGGAAGATGGTTTTACTTTCACGTCTTAATCTTTCTGGCAATCAACTGCAGGGCTCAATTCCACATACAGTTGGGAAGATGGTTTTACTTTCACATCTTGATCTCTCTGGCAATCAACTACAGGGCTCAATTCCAAATACAGTTGGGAAGATGGTTTTACTTTCACATCTTGATCTCTCTCGCAATCAATTGCAGGGCTCAATTGCAGATACAGTTGGCAACATGGTTTCTCTTGGAAAACTCTATCTCTCTTTGAATCATCTTCAAGGTGAGATTCCAAAATCCTTGAGTAATTTATGTAACTTACAAGCATTAGAGTTGGATAGAAACAATATCTCTGGACAGCTTGCACCAGACTTTGTGGCCTATGCAAATGACACATTAGTGACTTTGTCTTTATCAGCAAACCAGTTCAGTGGATCAGTTCCTGCTCTCATTGGATTTTCATCCTTGAGAGAGTTACATCTTGATTTTAATCAACTAAATGGAACTTTACCTAAAGGTCTTGGACAGTTGTCCAACCTTCAATCCTTGGATATTGCCTCAAATTCATTGCAAGGCACTATCAATGAAGCCCATCTCTTTAATCTATCCCAGTTGTCCTATTTAGACTTATATTAG	831	0.3923	MSSLEYLNLHSSELDDEIPDTIGDMGSLAYLDLSCNQLQGSIPNTIRKMVLLSHLDLFRKQLRGSIPDTVGKMVLLSRLNLSGNQLQGSIPHTVGKMVLLSHLDLSGNQLQGSIPNTVGKMVLLSHLDLSRNQLQGSIADTVGNMVSLGKLYLSLNHLQGEIPKSLSNLCNLQALELDRNNISGQLAPDFVAYANDTLVTLSLSANQFSGSVPALIGFSSLRELHLDFNQLNGTLPKGLGQLSNLQSLDIASNSLQGTINEAHLFNLSQLSYLDLY*	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0537	276	Gene3D	Ribonuclease Inhibitor	196	276	IPR032675	-
	Vvi16g0537	276	Gene3D	Ribonuclease Inhibitor	1	91	IPR032675	-
	Vvi16g0537	276	SMART	LRR_typ_2	97	120	IPR003591	-
	Vvi16g0537	276	SMART	LRR_typ_2	1	25	IPR003591	-
	Vvi16g0537	276	SMART	LRR_typ_2	121	144	IPR003591	-
	Vvi16g0537	276	SMART	LRR_typ_2	73	96	IPR003591	-
	Vvi16g0537	276	SMART	LRR_typ_2	145	169	IPR003591	-
	Vvi16g0537	276	SMART	LRR_typ_2	218	242	IPR003591	-
	Vvi16g0537	276	FunFam	Lrr receptor-like serinethreonine-protein kinase gso2	192	276	-	-
	Vvi16g0537	276	Pfam	Leucine rich repeat	76	134	IPR001611	GO:0005515
	Vvi16g0537	276	Pfam	Leucine rich repeat	3	59	IPR001611	GO:0005515
	Vvi16g0537	276	Pfam	Leucine rich repeat	220	275	IPR001611	GO:0005515
	Vvi16g0537	276	SUPERFAMILY	L domain-like	2	275	-	-
	Vvi16g0537	276	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	91	186	-	-
	Vvi16g0537	276	Gene3D	Ribonuclease Inhibitor	92	195	IPR032675	-
	Vvi16g0537	276	PANTHER	LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1	150	275	-	-
	Vvi16g0537	276	FunFam	Receptor like protein 29	1	70	-	-
	Vvi16g0537	276	PRINTS	Leucine-rich repeat signature	242	255	-	-
	Vvi16g0537	276	PRINTS	Leucine-rich repeat signature	124	137	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0537	Vvi-Chr16	10795240	10796070	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0537	1	275	Receptor kinase-like Gene Family	AT3G56370	33.788	1.01e-34	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0537	-		K13466	vvi:100253520	536.184