Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0535 ATGGCAGGACGGTCCTTTCAACACCTTCTTAGCTTTCTTGTGCTTTTGTTGCTATGTGCCAAACCTGGCCTGGGGAAAGTTACTGGGTGCATAGAGAGGGAGAGACAAGCTCTCCTTCACTTCAGACGTGGCCTTGTCGATCGCTATGGCCTTCTTTCCTCTTGGGGAGACGACAACAGAGATTGTTGCCAATGGAGAGGAGTCCAGTGTAGTAACCAGTCTGGTCACATCATCATGCTTCATCTTCCTGCCCCGCCAAATGAAGACTATTCTCAAGATGTTATTTACCAGTCTCTAAGAGGTGAGATAAGTCCTTCTCTGCTTGAATTGGATCACTTAACTCATTTGGATCTCAGCTATAATGATTTTGAAGGGAGGCATATACCTCCATTCCTTGGTTCCCTCAGCAGAATGCAGTACCTCAATCTCTCTCATGCCAATTTCGCTCAAACTGTTCCCACTCAACTGGGAAATCTTTCCAACTTGCTTTCCCTTGACCTCAGCGATAATTATCTCTTGAATTCTGGGAACCTGGAGTGGCTTTCTCGTCTTTCTTCTTTAAGACACCTTGACCTGAGTTCTGTCAACCTTAGTGAAGCCATCCACTGGTCACAAGCAATTAATAAACTCCCTTCTCTCATTCACTTGGACTTACAACACTGTTATCTCCCTCCCATCCCCCCACTCACCATTCCGTCTCTTTCCCATGGGAATTCCTCTGTCCCTCTTGTTTTCCTTGATCTCTCTGGGAATTATCTCACTTCTTCAATATACCCATGGTTGCTCAACTTTAGTACCACCCTCCTTCATCTTGATCTCTCTTTCAATGGTTTAAACGGTTCGATTCCGGAATATGCTTTTGGGAACATGAGTTCCCTTGAATATCTTGATCTCCATTCGAGTGAACTTGATGATGAAATTCCGGATACAATTGGAGACATGGGTTCACTTGCATATCTTGATATCTCTGAAAATCAACTGTGGGGCTCAATTCCAGATACAGTTGGGAAGATGGTTTTACTTTCACATCTTGATCTCTCTCTCAATCAACTGCAGGGCTCCATTCCAGATACAGTTGGGAACATGGTTTCTCTTAAAAAACTCTCTCTCTCTGAGAATCATCTTCAAGGTGAGATTCCAAAATCCTTGAGTAATTTATGTAACTTACAAGAATTAGAGTTGGATAGAAACAATCTCTCTGGACAGCTTGCACCAGACTTTGTGGCCTGTGCAAATGACACATTAGAGACTCTGTTTTTATCGGATAACCAGTTCAGTGGATCAGTTCCTGCTCTCATTGGATTTTCATCCTTGAGAGAGTTACATCTTGATTTTAATCAACTAAATGGAACTTTACCTGAAAGTGTTGGACAGCTGGCCAACCTTCAATCCTTGGATATTGCCTCAAATTCATTGCAAGGCACTATCTCTGAAGCCCATCTCTTTAATCTATCCTGGTTGTCCTATTTAAACTTATCTTCCAACTCTCTCACTTTCAACATGAGCTTGGATTGGGTTCCTCCATTTCAACTGCTTTCTCTACGATTAGCCTCCTGCAAATTGGGACCTCGTTTTCCTAGTTGGCTTCGTACTCAAAACCAGTTGAGTGAGCTTGATATCTCCAATTCTGAAATTTCAGATGTCCTCCCAGACTGGTTTTGGAATGTAACCTCAACTGTCAATACCTTGAGTATTTCCAACAATCGGATCAAAGGGACCTTACCGAATTTATCATCAGAATTTGGTTCTTTTTCTAACATAGATATGAGCTCAAACTGTTTTGAGGGTTCAATACCACAACTTCCTTATGATGTGCAATGGTTGGATCTCTCCAATAACAAGTTATCGGGGTCCATTTCTTTATTATGTACAGTTGGTACTGAGTTACTTCTACTTGACCTCTCAAACAACTCGTTGTCGGGAGGGCTGCCCAATTGTTGGGCGCAGTGGGAAAGCTTGGTAGTTCTTAATTTGGAAAATAACAGATTTTCTGGGCAAATTCCAATTTCATTTGATGTTTGTGGGTGGTGGGAGTATGCTAGAGCTGATCACATGGGGGCAATTTCTTTTGTTGTTTGTTTCTCTACCAAATTCAAAGTGTTAAGCACACAAGGGTAA 2118 0.4221 MAGRSFQHLLSFLVLLLLCAKPGLGKVTGCIERERQALLHFRRGLVDRYGLLSSWGDDNRDCCQWRGVQCSNQSGHIIMLHLPAPPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSLSRMQYLNLSHANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSVNLSEAIHWSQAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYLTSSIYPWLLNFSTTLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIGDMGSLAYLDISENQLWGSIPDTVGKMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKLSLSENHLQGEIPKSLSNLCNLQELELDRNNLSGQLAPDFVACANDTLETLFLSDNQFSGSVPALIGFSSLRELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEAHLFNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELDISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSSEFGSFSNIDMSSNCFEGSIPQLPYDVQWLDLSNNKLSGSISLLCTVGTELLLLDLSNNSLSGGLPNCWAQWESLVVLNLENNRFSGQIPISFDVCGWWEYARADHMGAISFVVCFSTKFKVLSTQG* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0535 705 SUPERFAMILY L domain-like 30 298 - -
Vvi16g0535 705 PANTHER LRR RECEPTOR-LIKE KINASE 321 403 - -
Vvi16g0535 705 SMART LRR_typ_2 386 410 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 266 289 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 362 385 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 338 361 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 110 135 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 435 459 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 290 314 IPR003591 -
Vvi16g0535 705 SMART LRR_typ_2 210 233 IPR003591 -
Vvi16g0535 705 SUPERFAMILY L domain-like 604 672 - -
Vvi16g0535 705 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Vvi16g0535 705 Pfam Leucine rich repeat 437 497 IPR001611 GO:0005515
Vvi16g0535 705 Pfam Leucine rich repeat 341 399 IPR001611 GO:0005515
Vvi16g0535 705 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi16g0535 705 Gene3D Ribonuclease Inhibitor 410 480 IPR032675 -
Vvi16g0535 705 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 480 581 - -
Vvi16g0535 705 Pfam Leucine Rich Repeat 112 132 IPR001611 GO:0005515
Vvi16g0535 705 FunFam Receptor-like protein EIX1 30 206 - -
Vvi16g0535 705 SUPERFAMILY RNI-like 246 600 - -
Vvi16g0535 705 Gene3D Ribonuclease Inhibitor 30 200 IPR032675 -
Vvi16g0535 705 Gene3D Ribonuclease Inhibitor 481 676 IPR032675 -
Vvi16g0535 705 Gene3D Ribonuclease Inhibitor 301 409 IPR032675 -
Vvi16g0535 705 ProSiteProfiles Leucine-rich repeat profile. 161 182 IPR001611 GO:0005515
Vvi16g0535 705 FunFam Receptor like protein 29 290 362 - -
Vvi16g0535 705 Gene3D Ribonuclease Inhibitor 201 300 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0535 Vvi-Chr16 10737560 10745298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0535 11 674 Receptor kinase-like Gene Family AT5G46330 31.143 6.87e-68 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0535 - K13466 vvi:100246778 1246.11