LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0530	ATGAAGATGCTTTTCTCGTCGCTCATCTCCAGTCAGATTCGGTTCTTGCTTCATGGCTTGAACGATTCCAACTTCGATTCCAACTTCGATTCCGTGGTTCGCGAGCTCTGTCAGTTTATTGAATATGGATATGAGGCAAGCATTTTGTTGCTCCAGACATGCTTGGATCACATGAATTTTCATGGGGGAGACATGAATGATATGCAACTCAAACCTGATGTACTAGCTGCAATCTTTAGATATTTATTGGATAAGCCAAATTTCAGTACCGTGCTTTGTGAAGCATTAAGAAGCTCAGTTATTGGTGAAGGATTTCTTGGAGAGTTCTGTAATGTGTTGCAGTTTTCAGTGTCTGAGAAAATTGGCCTTGGTCTTGCTTTGGCAGACTCAGAGAATGGTGATGTTAGAACAAGTGGGCAAAATTTCTGCATGCGTCAGATTGAGAAATTGTGTGGTAATCCTGCTTCTATTGATTCTCATGAGAAAATTCAGAAAATTATTATGTTCCTATATCAGTCAGAGGGCCTTTCCAAGCATGTAGACTCATTCATGCAAATGCTGTCTTTGATGGAGTTTAAAGAAAGGCCACCATTTGTATTAGCTCCATTACTTTCAGATGATTTACATGAGGACAGTTTTTCAAGGAATTTGGATTTGTTCTATGATTTCAGCGAAAATGAGTTTGATAGTATTCTAGCAGAAATGGAAAATGACACAAGTATGGCTGATATTATGAGGGAACTTGGTTATGGATGCACGCTTAGTACTTCTCATTGTAAAGAGGTCTTATCTCTCTTCTTGCCTCTCTCTGAAGTCACTCTCTCAAGAATACTTAGCACAATTGCCCGCACGCATGCTGGCCTTGAGGATAATCAAAATTCGTATTCAACATTCTGCTCTGCTATTGGTAGCAGCGCCTTATCTGATTCTTCATGCTTGAGCTGTTGGAATGTTGATGTCCTTGTAGATTCCATTAAGCAACTTGCTCCTGGAATCAATTGGACTCTTGTCATGGAAAATCTAGACCATGAAGGCTTCTACTTTCCCAATGAGGGGGCCTTTTCTTTTTTCATGTCCATTTATGCCCGTGCTTGTCAGGATCCCTTTCCACTCCATGCCGTATGTGGGTCTGTCTGGAATAATGTTGACGGCCAGATCTCTTTTCTAAGATATGCTGTAGCAGCCCCACCAGAAACATTTACCTTTGCACATTCTATTAGGAAACTGGCATATACCGATGCATTGCATGGTCAGGAGCTTCCGCATGGGCAGGCAAACCAAGCATGGTTATCTCTTGATCTTTTAGATGTGTTGTGTCAACTAGCTGAGAGAGGCCATGCTGGTTCAGTGCGACTGATGCTTGAGTTTCCTCTTAAACACTGCCCTGAAATTCTACTTCTTGGGATTGCACAAATTAATACTGCCTATAATCTTATCCAGCGTGAGGTATCTTCCACTGTTTTCCCCATGATTATTGGAAATGTCATGGGAAGTGGTGTTATTCTTCACCTTTGGCACTCTAATCCCAAACTTTTAGTGCATGGATTCTTGGATTTTATTAAAAGTGATCAAGGGAACATGGTTACAATTTTGGATCTTTGCCAAGAGCTGAAGATTCTATCATCTGTGTTGGAGCAGATTCCATTCCATTTTAGCATTCGGCTGGCTGCACTAGCTTCTCAGAAAGAATATGCAAGTCTCGATAAATGGTTGAATGATTGTCTAAGAACTCATAAAGATGTTTTCTTTGAGGAGTGTCTCAAGTTTTTGAAGGAGATAACCTTTGATGCAGCAGATGATGTCTCTGCCAATTCATTTCAACATTCTGGTGCTGGAATGAATATAAATGAGGAGACAAGTTCAATCTTTTGGAAGGTCCTCCAAGCTAATACTGATCAGATTGCCTCTAAACAGCTCTCTGAGGAGTTGAAAAGTTTGCATAGAGCATCTATGCATGTTAGTCCTAGGCTACAGAATGTTGGGGCTTCAGATTCATCGACATCTGATGTTTACACGAATGATATAGAGGCTGAGGCAAACTCTTATTTCCACCAAATATTTTCTGGTCAGCTGACCATTGATTCAATGATTCAAATGCTTGCACGTTTCAAGGAATCTTCAGACAGAAGGGAACAATCAATATTTGAGTGCATGATACAAAACCTATTTGAGGAGTACAGGTTCTTCCCTAGGTATCCAGAAAAGCAGCTTAAGATTGCGGCTGGTCTATTTGGTTCTCTGATAAAGCACCAGCTTGTGACTCATCTCACGCTTGGTATTGCTCTTCGTGGAGTGTTGGATGCATTGCGCAAACCAACAGATTCAAAAATATTCACTTTTGGAACAAAGGCTTTGGAGCAGTTTCTGGACCGGCTTATAGAGTGGCCACAATATTGCTATCATATTTTGCAAATATCTCATTTACGTGGTACTCATCCAGAGCTTGTTGCATTTATTGAACGAGCTCTTGCTAGGACTTCGTCTAGTCACTCTGAATCAAATGGGGGCAACAATTCTTCAACTGATCCCCATAGTGGTTCTGCTCCAGCTACTTTGGAAAATGTGGAGGTGCCTGATTCATCATGGCAACTTTTAGGATCTAGGACCACACAGCCTGGACAGCAGACCTCATCTCCACTACCAGCACAACAAAGACATCAAGGGTTTCTTGGTGACAGGCATAAAACATCTGCATCTTTGATTAATTATGGGAGACCAATTCTACCTCCCACTGGTCATGCTTCAAACGTTTCCACAAGTGATGCACTTGGCAGTCAAAAGTCCTTGCAAACAGTGTCGTCACAGACTGCTACTGGTGTTTCTGCAGCCGTGTCTTCCTCAACTGGTTTACTTCATCCTTCCCGAANCATTGCATCAACTAGGTTTGGTTCTGCTTTGAACATTGAAACGCTTGTTGCGGCAGCGGAGAGAAGAGATACACATATAGAGGCTCCTACATCTGAAATTCAGGACAAGATATCATTTTTGATTAATAATATTGCGTCTGCAAATATTGAAGCTAAAGCAAAGGAATTCACTGAGGTTTTAGATGAGCAGTACTATCCATGGTTTGCCCGGTACATGGTGATGAAAAGAGCAAGCATTGAGCCCAACTTCCATGACTCATACTTGAAGTTTTTGGACAAAGTTAATTCAAAGACATTGAATAAGGAGATTGTAAAAGCTGCTTATGAGAATTGCAAGGTTCTTTTGAGATCTGAGCTTATAAAATCAAGTTCTGAAGAACGCTCTTTGCTAAAAAATCTGGGAAGTTGGCTTGGAAAGTTTACCATAGGCAGAAATCAAGTACTCAGGGCTCGAGAAATAGATCCCAAGTCTTTGATAATAGAGGCATATGAGAAGGGCCTGATGATTGCTGTGGTCCCATTTACCTCGAAGATTTTGGAACCTTGCCAAAGCAGTCTTGCCTATCGGCCTCCCAATCCTTGGACCATGGCAATTCTTGGTTTACTTGTTGAGATTTATGCATTGCCAAATCTTAAAATGAATCTTAAGTTTGACATTGAGGTCCTGTTTAAGAACCTTGGTGTGGATATGAAGGAAGTAAAGCCGACTTCTCTTCTTAAAGATCGAGTTCGGGAAATAGAAGGAAACCCTGATTTTTCTAATAAAGATGTTGGGGCATCTCAGCCACAAATGGTTTCTGATATTAACCCTGGAATCATGTCCACATTGAGTCAAGTTGAGCTACAGCCTGATATTGTTAATTCATCTCATCCCGGTGGCCACTTAAATGTAATGACTCAGTATCCTTCTGGTCTTCATCTTGCTTCTGGTTCATTAACGGAGGATGATAAAATAGCAACCTTAAGCCTGGGTGATAGGCTTCCTACTGGTCAAGGGCTTTCACAAGTACCTCCAGCGCAGTCACCATATTCTGTTGGTCAGATCCCTGCACCGATCCCTAACATTGGAAGCCATATCATTTTCAACCAAAAACTTGGTGCTTTGGGCTTGCATTATTTCCAGAGAGTTGTACCCATTGCAATGGAGAGGGCTATCAAAGACATAATGGCTCCTATTGTTCAACGTAGTGTTACTATAGCAACTCAGACAACAAAGGAACTTGTTCTAAAGGATTATGCTATGGAGTCTGATGAGTCCCGCATATACAACGCTGCACATTTAATGGTTGCAAGTCTAGCTGGAAGTTTGGCTCATGTCACATGCAAGGAACCCCTTCGCGGCGCCATAACGAATCAGCTTAGGAATTCATTTCAGGGTTTAAACATTGGAACTGAACTTCTAGAACAAGCTGTGCCACTTGTTACTAATGATAATCTTGATTTGGGTTGTGCTGTGATTGAAAATGCTGCAACAGAGAAGGTACGCTCTTTTGTGTCACTAATGTACAACTGTGAACTCTCAAACTATAATCCATTGACTTCTATGCACTTGGTTACGTTCACCCATAAACTCATCATCATATGTCTTGGTTATCATCAGCATTGA	4473	0.4127	MKMLFSSLISSQIRFLLHGLNDSNFDSNFDSVVRELCQFIEYGYEASILLLQTCLDHMNFHGGDMNDMQLKPDVLAAIFRYLLDKPNFSTVLCEALRSSVIGEGFLGEFCNVLQFSVSEKIGLGLALADSENGDVRTSGQNFCMRQIEKLCGNPASIDSHEKIQKIIMFLYQSEGLSKHVDSFMQMLSLMEFKERPPFVLAPLLSDDLHEDSFSRNLDLFYDFSENEFDSILAEMENDTSMADIMRELGYGCTLSTSHCKEVLSLFLPLSEVTLSRILSTIARTHAGLEDNQNSYSTFCSAIGSSALSDSSCLSCWNVDVLVDSIKQLAPGINWTLVMENLDHEGFYFPNEGAFSFFMSIYARACQDPFPLHAVCGSVWNNVDGQISFLRYAVAAPPETFTFAHSIRKLAYTDALHGQELPHGQANQAWLSLDLLDVLCQLAERGHAGSVRLMLEFPLKHCPEILLLGIAQINTAYNLIQREVSSTVFPMIIGNVMGSGVILHLWHSNPKLLVHGFLDFIKSDQGNMVTILDLCQELKILSSVLEQIPFHFSIRLAALASQKEYASLDKWLNDCLRTHKDVFFEECLKFLKEITFDAADDVSANSFQHSGAGMNINEETSSIFWKVLQANTDQIASKQLSEELKSLHRASMHVSPRLQNVGASDSSTSDVYTNDIEAEANSYFHQIFSGQLTIDSMIQMLARFKESSDRREQSIFECMIQNLFEEYRFFPRYPEKQLKIAAGLFGSLIKHQLVTHLTLGIALRGVLDALRKPTDSKIFTFGTKALEQFLDRLIEWPQYCYHILQISHLRGTHPELVAFIERALARTSSSHSESNGGNNSSTDPHSGSAPATLENVEVPDSSWQLLGSRTTQPGQQTSSPLPAQQRHQGFLGDRHKTSASLINYGRPILPPTGHASNVSTSDALGSQKSLQTVSSQTATGVSAAVSSSTGLLHPSRXIASTRFGSALNIETLVAAAERRDTHIEAPTSEIQDKISFLINNIASANIEAKAKEFTEVLDEQYYPWFARYMVMKRASIEPNFHDSYLKFLDKVNSKTLNKEIVKAAYENCKVLLRSELIKSSSEERSLLKNLGSWLGKFTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVVPFTSKILEPCQSSLAYRPPNPWTMAILGLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRVREIEGNPDFSNKDVGASQPQMVSDINPGIMSTLSQVELQPDIVNSSHPGGHLNVMTQYPSGLHLASGSLTEDDKIATLSLGDRLPTGQGLSQVPPAQSPYSVGQIPAPIPNIGSHIIFNQKLGALGLHYFQRVVPIAMERAIKDIMAPIVQRSVTIATQTTKELVLKDYAMESDESRIYNAAHLMVASLAGSLAHVTCKEPLRGAITNQLRNSFQGLNIGTELLEQAVPLVTNDNLDLGCAVIENAATEKVRSFVSLMYNCELSNYNPLTSMHLVTFTHKLIIICLGYHQH*	1491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0530	1490	FunFam	Ccr4-Not transcription complex subunit	955	1203	-	-
	Vvi16g0530	1490	Gene3D	-	657	829	IPR038535	-
	Vvi16g0530	1490	MobiDBLite	consensus disorder prediction	827	922	-	-
	Vvi16g0530	1490	FunFam	Transcription regulator	661	829	-	-
	Vvi16g0530	1490	Pfam	CCR4-NOT transcription complex subunit 1 CAF1-binding domain	982	1201	IPR032191	-
	Vvi16g0530	1490	MobiDBLite	consensus disorder prediction	827	884	-	-
	Vvi16g0530	1490	Gene3D	-	955	1204	-	-
	Vvi16g0530	1490	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX	31	1450	IPR040398	GO:0017148\|GO:0030015
	Vvi16g0530	1490	Pfam	CCR4-NOT transcription complex subunit 1 HEAT repeat	482	628	IPR032194	-
	Vvi16g0530	1490	Pfam	CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819	1329	1450	IPR024557	-
	Vvi16g0530	1490	Pfam	CCR4-NOT transcription complex subunit 1 TTP binding domain	653	829	IPR032193	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0530	Vvi-Chr16	10555970	10598126	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0530	K12604		-	vvi:100256945	2801.93