Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1255 ATGGTCGGAAAAACCATGTCCATGGCGGCAACTTCGCGCGAAAAGCTGGCAAGTCTCCTGAACGCTGCCAAGTTGGCCAATGACATCCCCTCCAAGCTCGAATCCCTGCGCCAACTGCGCCATGAACTTCCACCCGAAGACCCCGTCCTCCTCACTGAGTTCCTTCCCTCACTCTTCTTTTTCCACTCAGATCCCTTTGGCCCCGTTCGCAAATTTGTCACCGAGATGCTTGGTGAGATTGGATTGAAGAACACTGAGTTCTTGTCTGACATTGTGCCTGTGCTAATTGAGGTACTGAATGACGACACACCGGCTGTAGTTCGGCAAGCTCTTCTGTGTGGAATTGAGTTGTTTCGTGGCACACTTGAGAAAATTGTGGTTCAGGGTCTTTACTCTAGTGATTTAGATGGTGCACTTGAATCTGCATGGGAATGGATGCTTAAATTCAAAGAAAAAGCATACTCACTAGCTTTTCAATATGGAAGTGGTGGTGCTAAGCTGCTGGCACTGAAATTTGTTGAAGCAGTTGTTCGTCTTTACACTCCTGATCCTAGTGGTTCCTCTGAGCCTACTTCTCATCAAGGAAAGCCTGTGGAATTTAATATATCATGGCTGAGGCGGGGTCATCCAGTACTCAATATTGGAGATTTGAAAATTGAAGCAAGCCGTAGTGTGGGTCTCTTGCTTGATCAACTCAGATTTTCAAATGTGAAGTCCCTTAGTAACTCAGTTATCATTGTGCTGATTAAAAGTCTTTCAGCTATTGCAAATGAAAGGCCTGCATTCTATGGTCGCATCTTGCCAGTTTTGCTTAGTTTGCAACCTTCCAGCTCTGTTGTTAATGGGTTCTGTGTATCAGCTGCACATCTTGCTTTGAAGAATGCCTTCCTTACTTGCTCGAAATGTACACATCCAAGTGCTGCTCCGTGGAGAGATCGTTTGGCCGGGGCCTTGAAGGAAATACAGTCAGAAGGAAAGGCAGATCGGGTTTTCCACCTAATCTCATCTAGCAATGGAAGCATTGAGAGAGAGAAGGATGATCAACCTGTTATCAAGGAAGAGGAACCTGCAATAAATTCTGATGATTCAGTACACAGTAATTTGGCAAGAAAACGATCTGGATCTCAAATTGAAGATGATTTAGCTGAAGATGTTCCTGGAAAACGTGTCAGGGCAACAATTGATGCTTTGGAAGAACCTAGCAAAGAGTTGGATGAACGTACCACTTCCAACTCACAGGATGAGACTCCTTCAAATGTACCGTCATCTTCAAGCGGAGATACGGATAATGGGCCCGTAAGGCAGCTTGTTGCCACATTTGGTGCTTTGATTGCTCAAGGTGGAAAAGCTGTTGCGCATCTTGAGATTCTCATCTCAAGTATTTCTGCTGACTTGCTAGCTGAGGTGGTGATGGCAAATATGCAAAACTTACCTCCAAATTTCTCTAATACTGAAGGAAATGAACAGCTGCAAGACATTAGTATGATTGGTTCTGATGACAAGGCTAAATATCCACCTTCATTTGTAGCTGCTGTTATGTCACTTTCTAGTACTTTTCCACCAATAGCTTCCCTTCTTGATGCACAACAATCAGTTTCAAATGAGGTTGAGAAGTCACAAGGGGAGGAAGAAATTTCTGCAACTGCTGTCAATAGTGGTGCTGTTCACTCTGGCATGAATGTTGTATCTGAAAATGTACCATCTCCTACTGATTTTCCAACTTCTGATGCTAGTATACCTGGAGTGGAGAATGGCTGTACAACTATGCCTCCTGACATCCATGACGTTGGAAACTCAGAGAGTGGAATTCCTGGCCTGGATTCTTTTGGTCGTAGTGATGCCTTGTCACAAACTTTTGATCCTTCTTTATTGGCTTCCACTGAAGTGGGCCTAGAAGATGGCAGCCAAGAGCAAGATACAAGTTTGGATCTGAGGTCACCACTGAACTTAGCTCCGTCAATATCAACAGATAGATCTGAGGATCTGAGCCCAAAAGCGGCTGTTAGAGATGTCAACAGCTTGGTGTCATCAACAGCTACTTCAGTTGTGTTGCCTTCCCGTTTAGTCTTGCCAAAGATGATTGCTCCTGTTGTTGAACTTGAAGATGAACAAACGGATCATTTGCAAAAGTCATGTTTTATGCGTATTATTGATGCATATAAGCAAATAGCTGCAGCTGGAGGCTCCAATGTCCGCTTTTCAATACTTGCTTATTTAGGAGTTGAGTTTCCTTTGGAATTAGACCCATGGAAACTATTACAGAAGCATATTTTGATTGATTACACTAGTCACGAGGGACATGAGTTGACATTACGTGTCCTCTACAGATTATTTGGTGAGGCTGAAGAGGAGCCTGACTTCTTTTCTTCCACTACTGCAGCTTCTGTATACGAAAAATTCCTCTTTACAGTGGCAGAAGCACTTAGAGATTCCTTTCCACCTTCAGATAAATCATTGAGTAAATTGCTTGGCGAATCTCCTTATTTACCAAAATCGGTTCTTAAAATTTTAGAAAACATGTGTTCTCCCGGAAATGGGGATAGAGGTGAAAAGGAATTACAGTCACTGAATGCGGATAGAGTTACTCAAGGTCTAAGTGCTGTATGGAGTTTGATTCTTCTTAGGCCTCCGATCCGAGATACTTGCTTACAAATTGCTCTACAGAGTGCAGTGCATCACTTGGAAGAAGTGCGTATGAAGGCAATACGTCTGGTGGCAAATAAGCTTTATCCTTTGTCATCCATTTCTCAGCAAATAGAAGATTTTGCAAAGGAAATGCTTATCTCAGTTACAAGTAACGATGTTTCAGAATTAACAGATGCTGAAGTGTCCGTTGCTGATTCACAAAAGGGACCTGATGCTGAAAAGGTTTCAAACGAACAATCATCATTGAGTGGCAGCACTAAAGATGTCTCCGATAATCGTCAATCATGCACATCTGAGAGTGTCTTACCAGAATCCGTTTCTGAGGCTCAGAGGTGCATGTCATTGTATTTTGCTTTGTGTACAAAGAAACATTCTCTCTTTCGCCAAATATTTGTCATCTATAGATGCACATCAAAGGCAGTGAAGCAGGCAGTACATCGACAAATCCCAATACTAGTACGAACTATGGGCTCATCCTTAGATCTCCTTGAAACTATTTCGGATCCTCCAAATGGAAGCGAGAATCTTCTAATGCAGGTGTTGCATACACTTACAGATGGTACGATCCCTTCTAAGGATTTAATAAGCACTGTGAAAAGGTTGCATGGTTCAAAACTCAAGGACGCAGAGGTTCTTATTCCGGTATTACCATTCCTATCAAATGAAGAGGTAATACCGATTTTTCCTCACATTGTGAATCTTCCTTTGGAGAAGTTCCAAACAGCACTTGGTCGCATATTACAGGGATCATCACAGTCTGGTCCAGTGCTTTCTCCGGCTGAAGTTTTAATTGCAATTCATGGAATTGATCCTGAAAGGGATGGAATTCCCTTGAAAAAGGTGACAGATGCATGCAATGCTTGTTTTGAGCAGCGACAAACTTTTACGCAGGAAGTTATTGCAAGAGTTTTGAATCAGTTGGTTGAGCAGATTCCTCCACCTTTACTATTCATGCGTACAGTGTTACAAGCAATTGGTGCTTTTCCAACACTGGTGGACTTTATCATGGGGATTCTTTCTCGCCTTGTGACAAAGCAGATATGGAAATATCCGAAGTTGTGGGTGGGATTCTTGAAGTGTGTGCAGCTGACAAAACCACAGTCATTTAGCGTTTTGCTTCAGCTGCCTCCAGCACAATTGGAGAATGCATTAAATAGAATTTCAGCCTTGAAGGCACCATTGATTGCACATGCTAGCCAGCCAGATATACAATCCAAACTTCCGAGGGCTATGCTAGTTGTTCTTGGAATTGCATCCGATTCTCAGGTATCAAGTCAAGCACAAACTACTCAGACACAGATTACTCAGACACAAACTAGTCAGACACAGACTACTCAGACACAAACTAGTCAAACACATACTACTCAGACACAAACTAGTCAAACACAGACTGGTGAGACAAGCAACTCAGACAAGGACACAGTGACCGAGAAATCTAAAGAATCATCTACAGCGAGCTAA 4107 0.428 MVGKTMSMAATSREKLASLLNAAKLANDIPSKLESLRQLRHELPPEDPVLLTEFLPSLFFFHSDPFGPVRKFVTEMLGEIGLKNTEFLSDIVPVLIEVLNDDTPAVVRQALLCGIELFRGTLEKIVVQGLYSSDLDGALESAWEWMLKFKEKAYSLAFQYGSGGAKLLALKFVEAVVRLYTPDPSGSSEPTSHQGKPVEFNISWLRRGHPVLNIGDLKIEASRSVGLLLDQLRFSNVKSLSNSVIIVLIKSLSAIANERPAFYGRILPVLLSLQPSSSVVNGFCVSAAHLALKNAFLTCSKCTHPSAAPWRDRLAGALKEIQSEGKADRVFHLISSSNGSIEREKDDQPVIKEEEPAINSDDSVHSNLARKRSGSQIEDDLAEDVPGKRVRATIDALEEPSKELDERTTSNSQDETPSNVPSSSSGDTDNGPVRQLVATFGALIAQGGKAVAHLEILISSISADLLAEVVMANMQNLPPNFSNTEGNEQLQDISMIGSDDKAKYPPSFVAAVMSLSSTFPPIASLLDAQQSVSNEVEKSQGEEEISATAVNSGAVHSGMNVVSENVPSPTDFPTSDASIPGVENGCTTMPPDIHDVGNSESGIPGLDSFGRSDALSQTFDPSLLASTEVGLEDGSQEQDTSLDLRSPLNLAPSISTDRSEDLSPKAAVRDVNSLVSSTATSVVLPSRLVLPKMIAPVVELEDEQTDHLQKSCFMRIIDAYKQIAAAGGSNVRFSILAYLGVEFPLELDPWKLLQKHILIDYTSHEGHELTLRVLYRLFGEAEEEPDFFSSTTAASVYEKFLFTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSPGNGDRGEKELQSLNADRVTQGLSAVWSLILLRPPIRDTCLQIALQSAVHHLEEVRMKAIRLVANKLYPLSSISQQIEDFAKEMLISVTSNDVSELTDAEVSVADSQKGPDAEKVSNEQSSLSGSTKDVSDNRQSCTSESVLPESVSEAQRCMSLYFALCTKKHSLFRQIFVIYRCTSKAVKQAVHRQIPILVRTMGSSLDLLETISDPPNGSENLLMQVLHTLTDGTIPSKDLISTVKRLHGSKLKDAEVLIPVLPFLSNEEVIPIFPHIVNLPLEKFQTALGRILQGSSQSGPVLSPAEVLIAIHGIDPERDGIPLKKVTDACNACFEQRQTFTQEVIARVLNQLVEQIPPPLLFMRTVLQAIGAFPTLVDFIMGILSRLVTKQIWKYPKLWVGFLKCVQLTKPQSFSVLLQLPPAQLENALNRISALKAPLIAHASQPDIQSKLPRAMLVVLGIASDSQVSSQAQTTQTQITQTQTSQTQTTQTQTSQTHTTQTQTSQTQTGETSNSDKDTVTEKSKESSTAS* 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1255 1368 Pfam Symplekin tight junction protein C terminal 1090 1268 IPR022075 -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 955 982 - -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 1317 1368 - -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 339 410 - -
Vra9g1255 1368 PANTHER SYMPLEKIN/PTA1-RELATED 1 1241 - -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 338 432 - -
Vra9g1255 1368 Pfam Symplekin/PTA1 N-terminal 104 323 IPR032460 -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 411 432 - -
Vra9g1255 1368 Gene3D - 2 348 IPR011989 -
Vra9g1255 1368 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1241 - -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 631 660 - -
Vra9g1255 1368 SUPERFAMILY ARM repeat 34 1224 IPR016024 -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 631 667 - -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 1317 1352 - -
Vra9g1255 1368 MobiDBLite consensus disorder prediction 941 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1255 Vra-Chr9 19934348 19962472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1255 K06100 - gmx:100779360 2256.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1255 9 19934348 19962472 Vra9g1255 9 19934348 19962472 ECH