Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1243 ATGACGATTCCCTCTTCTACGAATCCAGACGGATCTTTCAAAAATGCAATGCCTTCGTATTTTTATTTACCACCACTGGATGTTTCTGCCGCATTTCCACAGGCAACACCAGCATCAACGTTTCCTCCTTCTGCTTCAGATTATTTTCAATTTGACGACTTGTTGACAGCAGAGGAGCAAGCCATTAGGAAGAAAGTAAGAGAGTGTATGGAAAAAGAAATTGCTCCAATAATGACCGAGTACTGGGAGAAGGCCAAATTCCCATTTCATGTTATTCCAAAGCTTGGTGCCTTGCACATTGCCGGTGGCACGATCAAGGGTTATGGCTGTCCTGGTCTTTCTATCACTGGAAGTGCAATAGCTACTGCAGAAGTTGCAAGAGTTGATGCCAGCTGTTCAACTTTTATTTTGGTCCATTCATCCTTAGCAATGCTTACTATTGCATTGTGTGGATCAGAAGCTCAGAAGCAAAAGTATCTGCCTTCTCTGGCACAGTTTCAGACTGTAGCATGCTGGGCTTTGACTGAACCTGACTATGGAAGTGATGCCAGTGCTTTGAAGACCACTGCCACAAAGGTGGAGGGAGGATGGATACTTGAGGGCCAAAAGCGGTGGATAGGAAACAGTACATTTGCTGATGTTTTGGTTGTCTTTGCTAGGAATGCAGCAACGAATCAAATAAATGGATTTATTATTAAAAAGGACGCACCTGGTTTAACAGTAACAAAAATAGAGAATAAAATTGGACTTAGGATTGTACAGAATGGTGACATTGTTATGAGAAAAGTTTTTGTCCCTGATGAGGACAGAATTGCAGGAGTAAACTCTTTTCAGGACACAAACAAGGTGCTTGCTGTTTCACGTATAATGGTTGCTTGGCAACCCATTGGTATATCAATGGGCATATATGATATGTGTCACAGGTATCTAACAGAGAGAAAACAATTTGGAGCTCCATTAGCAGCTTACCAAATCAGCCAACAGAAGCTTGTCCAAATGCTTGGAAATATTCAAGCTATGATTCTTGTTGGTTGGCGTCTGTGCAAATTGTATGAGAGTGGTAAAATGACTCCAGGTCATGCTAGCTTGGGAAAGTCATGGATCACTTTGAGAGCAAGAGAAACAGCTGCTCTGGGCCGAGAATTGCTAGGTGGCAATGGAATTTTGGCTGATTTTCTTGTGGCGAAGGCATTTTGTGATTTAGAACCAATCTATACCTACGAAGGCACGTATGACATCAACACTTTGATTACAGGTAGAGAAGTTACTGGCTTTGCTAGCTTTAAACCAGTTGCGCAAAGAAGCCGATTGTAG 1314 0.4224 MTIPSSTNPDGSFKNAMPSYFYLPPLDVSAAFPQATPASTFPPSASDYFQFDDLLTAEEQAIRKKVRECMEKEIAPIMTEYWEKAKFPFHVIPKLGALHIAGGTIKGYGCPGLSITGSAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQFQTVACWALTEPDYGSDASALKTTATKVEGGWILEGQKRWIGNSTFADVLVVFARNAATNQINGFIIKKDAPGLTVTKIENKIGLRIVQNGDIVMRKVFVPDEDRIAGVNSFQDTNKVLAVSRIMVAWQPIGISMGIYDMCHRYLTERKQFGAPLAAYQISQQKLVQMLGNIQAMILVGWRLCKLYESGKMTPGHASLGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLITGREVTGFASFKPVAQRSRL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1243 437 Pfam Acyl-CoA dehydrogenase, C-terminal domain 281 422 IPR009075 GO:0016627
Vra9g1243 437 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 280 425 IPR036250 GO:0016627
Vra9g1243 437 PANTHER ACYL-COENZYME A OXIDASE 4, PEROXISOMAL 1 435 - -
Vra9g1243 437 Gene3D - 36 169 IPR037069 GO:0016627|GO:0050660
Vra9g1243 437 Gene3D - 277 436 - -
Vra9g1243 437 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 46 275 IPR009100 GO:0016627
Vra9g1243 437 Gene3D - 170 276 IPR046373 GO:0016627
Vra9g1243 437 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 381 400 IPR006089 GO:0003995
Vra9g1243 437 Pfam Acyl-CoA dehydrogenase, middle domain 171 263 IPR006091 GO:0016627
Vra9g1243 437 Pfam Acyl-CoA dehydrogenase, N-terminal domain 56 165 IPR013786 GO:0016627|GO:0050660
Vra9g1243 437 PANTHER ACYL-COENZYME A OXIDASE 1 435 IPR045008 GO:0003995|GO:0006635
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1243 Vra-Chr9 19498925 19505907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1243 1 437 Acyl Lipid Metabolism Gene Families AT3G51840 81.007 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1243 K00232 - gmx:100125585 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g1243 9 19498925 19505907 Vra9g1243 9 19498925 19505907 ECH