Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1130 ATGGGTAGAGCTGAAGTAATACCTGAGAACCCCCTTCAAGCAGTTCCTATCCTTTCAAGAGAAAGCAGTTTTTCATCTTCACCAAGAAGGTTGGAGGGCAAGGTTGCTATTGTAACAGGGGGTGCGAGAGGGATTGGTGAAGCAACGGTGCGAGTGTTCGTGAAGAATGGTGCGAGGGTGGTGATAGCGGATGTCGAGGATGCACTTGGCAGGATGGTGGCGGAGACCTTGGCCCCTTCAGCCACGTACGTGCACTGCGACGTTAGCGTGGAAGAAGAGGTTGAGAATTTGGTGAGTTCCACAGTTTCTCGGTACGGGCAAGTGGACATAATGTTCAACAACGCAGGGGTGTTAGGAAACCAGTCGAAGAACAAAAGCATTCTGAACTTTGACCCGAACGAGTTCGACAGTGTGATGCAAGTGAACGTGAAGGGCATGGCCTTGGGGATCAAGCACGCTGCAAGGGCCATGATTCCTAAGGGCATTGGGTGCATAATTTCCACTGCTAGTGTTGCTGGGGTGATGGGGGGTCTTGGCCCACATGCTTACACTGCCTCAAAGCATGCGATTGTGGGGCTAACCAAGAACACTGCTTGTGAGTTGGGGAGGTATGGGATAAGGGTGAATTGTATTTCCCCCTTTGGGGTGGCCACCAACATGCTTGTGAATGCTTGGAGAATAGGTGATTGTGATGAGGAAGGAGGTGATGATGATGAGGGTATGAATTTTGGGTTACCATTTCCAGAGGAGGTGGAGAAAATGGAGGGGATTGTGAGAGGGCTTGCCAACTTGAAAGGACCAACTCTAAGACCCAAAGACATTGCTGAGGCTGCACTCTATCTTGCCAGTGATGAGTCTAAGTATGTTAGCGGTCATAATCTTGTGGTGGATGGTGGAGTCACCTCCTCAAGAAACTGCATTGGTTTGTAA 930 0.5 MGRAEVIPENPLQAVPILSRESSFSSSPRRLEGKVAIVTGGARGIGEATVRVFVKNGARVVIADVEDALGRMVAETLAPSATYVHCDVSVEEEVENLVSSTVSRYGQVDIMFNNAGVLGNQSKNKSILNFDPNEFDSVMQVNVKGMALGIKHAARAMIPKGIGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATNMLVNAWRIGDCDEEGGDDDEGMNFGLPFPEEVEKMEGIVRGLANLKGPTLRPKDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1130 309 Pfam Enoyl-(Acyl carrier protein) reductase 256 301 - -
Vra9g1130 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Vra9g1130 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vra9g1130 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Vra9g1130 309 Gene3D - 20 307 - -
Vra9g1130 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 301 IPR036291 -
Vra9g1130 309 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 309 - -
Vra9g1130 309 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 5 309 - -
Vra9g1130 309 Pfam short chain dehydrogenase 34 223 IPR002347 -
Vra9g1130 309 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Vra9g1130 309 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Vra9g1130 309 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vra9g1130 309 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Vra9g1130 309 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Vra9g1130 309 PRINTS Glucose/ribitol dehydrogenase family signature 264 284 IPR002347 -
Vra9g1130 309 CDD secoisolariciresinol-DH_like_SDR_c 31 301 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1130 Vra-Chr9 15157842 15159440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1130 28 302 Miscellaneous Gene Families AT4G05530 34.164 4.19e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1130 - - gmx:100790562 518.079