Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0867 ATGAGTATCGATGAAATGCAAAAAATGGCTTCAAGTAGTGTGCCCAAATGGCACTCTTCATCAGTCACAACCAAAATTGTCAATAACTTAAATCCTATATGCCAAGCTACCCAACAATTAACTCTCAAAGGGAAGTTCGTGATCATACACAACCAAAGCAAATCAATTCCTGGAAAGTTTATTTCTGTCCAGATTTACAGTGGAACTGATGTTGATCCTGAGACTGGTAAAGGGAAATTGAGCGAGAAAGCACATTTCAAACAAGGTGAGAGCATGAAACACTGTCATGATGCACATACCACGATATATAAAATTAAGATACATGTTGACTCAAATTTTGGAACTCCAAGAGCTTTTGTTATTCAAAACAAGTACAAGAAGAAGTTCTTCCTTCAGTCTGCATCTATTGAGACTTCCAGCAACCGCACCATTCACTATGATATCAATTCATGGATATATCCAATGAAGAAGACCAAATCTGATAGGCTCTTCTTCTCAAATAGATGTTATCTTCCAAGTCAAACGCCAAGAGCATTAGTGGAGCTAAGAAAGGAAGAGCTTGATATATTGAGGGGTAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTACGACTTCTATAACGATCTTGGCGATCCTGAAAAAGGTCCTGAACACCTTAGACCAGTCCTTGGTGGCACAAAGTTGTTTCCATATCCACGTAGAGGAAGAACAGGTCCATCTAGTGAGAGCCGGCCACAACCAATGAACTTTGGCATATATGTTCCATCAGATGAGAGATTTGCCCCCAATAAATTGAAGGAGTTGAAATCAAGTTGTGTCCATGCTATGGTACATTTTTTGTCACCAAAGGCAGAATTATTACCACAGAGAAATTCTGCAAACTTTCAATCATTCGAAGAGTTACTTGAGATGTTTTCTAGCAATAGGAGCCAAATAATAGAGGGGTGGATGAAAGACAACTTAAAGAAACTGATACCTGTTGCGTACTTGAAGGAAATAACTATTGCAAACAAGGAAAATCATGGACAATTGCCTATCCCTCAAATCATATCCGAAAATGAATTGGCTTGGAAAGATGATATAGAGTTTGGAAGACAAATGCTTGCAGGAACTCACCCCACCAGAATACAATGCTTAACGACATTCCCACCTCAGAACAAATATGGAATACAGAGTTCAATAAAGAAATCAATCATAGAACAGAAGCTAGAAGGATGGACACTTTCTCAGGCAATGGAGCAGGGAAGAATTTTCATGCTGGACCACCATGACTACCTTATTCCATATTTGAACAGAATAAACGCAAATGGGGTATGTGCTTATGCATCAAGGACCCTTCTATTCTTAAGGACTGATGGCATGCTTAAGCCATTGGCAATAGAACTTAGCTTGCCAGGTCCATCTCCTCACCTTGAAATCCATAGGGTTTTTCTTCCAGCCAAACAGGGAACACAAGCAGCACTTTGGCAGCTTGCCAAAGCTCATGTATTGGCTAATGATTCCGTTTATCATCAACTAATTAGCCATTGGTTATGCACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCAATCCATAGGTTGTTGAATCCTCATTTTAAAGATACCATGCACATAAATGCCTTGGCAAGACTCATCCTTATAAACTCCGGAGGAATTCTCGAGAGAATCTTATTTCCAGGTGAAATCTGTATGCAGATCTCATGTGATCTCTATAAAGAATGGAGATTCATTGACCAAGCACTCCCAGCTGATCTACTCAAAAGGGGCATGGCTGTACAAGATCCAGACATGAATAACCCCACAGGGATTCAGCTTCTGCTCATGGACTATCCCTATGCCACTGATGGACTTGAAATATGGGTAGCCATCAAAGAATGGGTCAAAGACTTTTGCTCATTCTTCTACAAAGACAACGAGGCCATTGAGGGTGATGTTGAACTGCAAGCCTGGTGGTCAGAGATTAGAACTCAAGGCCATGGTGACAAACACAATGACACATGGTGGAACCAAATGACAACACTCTCAAACCTTGTGGAGACACTAACAATCCTCATATGGATTGCTTCTGCCAAACATGCATCTCTAAACTATGGCCAATATGCATACAGTGGCTACCCTCCAAACCGCCCCACACTATGCAGGAAATTTGTTCCTCTAGAAGGGACAGTGGAGTTTGGTGAGTTCCTCAAGGACCCAGATAAGTTTTTCCTCAAGATGCTTCCTGATAGGTTTGAGATGAGTCTTGCAGTGGCATTGGTGAATGTTCTCTCAAGTCACACTTGTGATGAGGTCTACTTGGGGTGCCAGCAATCACCAGGGTGGATAGACAATGAAGTGATTCAGAATAGGTTTGCTGAGTTCAAACAAGAACTAAAGGAGATTCAAGCAAGGATCATGCAAAGGAATAGGGATCCTAAGCTTAAGAATAGACGTGGCCCTGCGAACATTGAGTACACTCTTCTCTACCCTGATGCAGCTACTTCTTCTGCCTCAAAAAGAGGAATCACAGGAAGGGGTATACCTAACAGCATATCAATTTGA 2583 0.4119 MSIDEMQKMASSSVPKWHSSSVTTKIVNNLNPICQATQQLTLKGKFVIIHNQSKSIPGKFISVQIYSGTDVDPETGKGKLSEKAHFKQGESMKHCHDAHTTIYKIKIHVDSNFGTPRAFVIQNKYKKKFFLQSASIETSSNRTIHYDINSWIYPMKKTKSDRLFFSNRCYLPSQTPRALVELRKEELDILRGNGMGERKEWDRIYDYDFYNDLGDPEKGPEHLRPVLGGTKLFPYPRRGRTGPSSESRPQPMNFGIYVPSDERFAPNKLKELKSSCVHAMVHFLSPKAELLPQRNSANFQSFEELLEMFSSNRSQIIEGWMKDNLKKLIPVAYLKEITIANKENHGQLPIPQIISENELAWKDDIEFGRQMLAGTHPTRIQCLTTFPPQNKYGIQSSIKKSIIEQKLEGWTLSQAMEQGRIFMLDHHDYLIPYLNRINANGVCAYASRTLLFLRTDGMLKPLAIELSLPGPSPHLEIHRVFLPAKQGTQAALWQLAKAHVLANDSVYHQLISHWLCTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGILERILFPGEICMQISCDLYKEWRFIDQALPADLLKRGMAVQDPDMNNPTGIQLLLMDYPYATDGLEIWVAIKEWVKDFCSFFYKDNEAIEGDVELQAWWSEIRTQGHGDKHNDTWWNQMTTLSNLVETLTILIWIASAKHASLNYGQYAYSGYPPNRPTLCRKFVPLEGTVEFGEFLKDPDKFFLKMLPDRFEMSLAVALVNVLSSHTCDEVYLGCQQSPGWIDNEVIQNRFAEFKQELKEIQARIMQRNRDPKLKNRRGPANIEYTLLYPDAATSSASKRGITGRGIPNSISI* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0867 860 Pfam Lipoxygenase 179 837 IPR013819 GO:0016702|GO:0046872
Vra9g0867 860 ProSiteProfiles PLAT domain profile. 42 166 IPR001024 GO:0005515
Vra9g0867 860 Gene3D - 171 266 - -
Vra9g0867 860 Gene3D PLAT/LH2 domain 17 170 - -
Vra9g0867 860 SMART LH2_4 40 167 IPR001024 GO:0005515
Vra9g0867 860 Gene3D - 486 859 - -
Vra9g0867 860 Coils Coil 791 818 - -
Vra9g0867 860 PANTHER LIPOXYGENASE 97 858 - -
Vra9g0867 860 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 52 170 IPR036392 GO:0005515
Vra9g0867 860 ProSitePatterns Lipoxygenases iron-binding region signature 2. 535 545 IPR020834 GO:0016702|GO:0046872
Vra9g0867 860 SUPERFAMILY Lipoxigenase 171 860 IPR036226 -
Vra9g0867 860 Gene3D - 359 485 - -
Vra9g0867 860 PRINTS Lipoxygenase signature 490 507 IPR013819 GO:0016702|GO:0046872
Vra9g0867 860 PRINTS Lipoxygenase signature 508 525 IPR013819 GO:0016702|GO:0046872
Vra9g0867 860 PRINTS Lipoxygenase signature 528 548 IPR013819 GO:0016702|GO:0046872
Vra9g0867 860 PANTHER LIPOXYGENASE 97 858 IPR000907 GO:0016702|GO:0046872
Vra9g0867 860 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 860 IPR013819 GO:0016702|GO:0046872
Vra9g0867 860 ProSitePatterns Lipoxygenases iron-binding region signature 1. 508 522 IPR020833 GO:0016702|GO:0046872
Vra9g0867 860 Gene3D - 268 358 IPR027433 -
Vra9g0867 860 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Vra9g0867 860 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Vra9g0867 860 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Vra9g0867 860 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Vra9g0867 860 PRINTS Plant lipoxygenase signature 346 362 IPR001246 GO:0016491
Vra9g0867 860 PRINTS Plant lipoxygenase signature 445 469 IPR001246 GO:0016491
Vra9g0867 860 PRINTS Plant lipoxygenase signature 767 781 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0867 Vra-Chr9 10223656 10231364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0867 40 860 Acyl Lipid Metabolism Gene Families AT3G22400 46.154 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0867 K00454 - gmx:100797946 1570.83