Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0847 ATGAAGGGTGGTGGTGCTAAGAAAAAGGCCACGGCGGATGCTCCTGCCGAGGTGGTGGAGCCTTCTGCTGCTGCGGATTTGGGAGTTGGAGAGGGTGGAAGTGACAAAGTTCAAAGCTTTGAGGGGAACGAGGGTACCCAGTTGCGGAACGGTGAGGATGAGGAACCCCAGGTGGAGGATTCTGAAGGGGAGGGTGAGGAAGGAGAAGGAGAGGGGGAAGAAGAGTATGGTGTGGAGGGAGATGAAGAAGAGGAAAATGCTGGTGGTGCTTTTCCAGGGGCTCAAGGTGTTGTTCTTGCTGAGAATTTTTATGAAGTTGAAGCTATACGTCGTAAGAGGGTGCGCAAGGGTCAGGTGCAATACTTTATCAAGTGGAATGGGTGGCCTGAGACAGCCAACACTTGGGAGCCACCAGAAAATCTAGTTTCTGTTCCTGATATTGTTGAAGCTTTTGAGGAGAGCTTGAGGTCAGGAAGACACCGTAAGCGCAAACGCAAGCACGTGGTGCATCATACTCAACCCAAGAAGAGGCTGGAGCGTTCTACCACTCCATACAGTCTTCGACGCTTTTCCAGTACTGTTGGAAACCATTCACAGTCTGCTCTTCCTGTTCTTAGTGATGCTAGCCTTCCTGTTATTCCTGCCTTTCCTCAGACTGTTCTTTTTGCTGATGAACTGGGAAATGGTGCTGGCAGCAATCTTGAAAGTGCGGCACCTGTTATTGTTAACAAATCTCCAATTGTTTCAGAACAAAATGTTGAAAGGAATGAGGAAAATGATTATGATCCCAAGCTTAGTGAGCTTAAAGCCTCTTCTGCCTGTGGGAATGACGCTGACAGGCTTGCAATACGAATTCCAGAGGCAATGCCTTCTGGTCCTGGGTTTGCTGGCAATAATGGTCAAACAGCTGCTAAACCAAAGGTGGTTCGCATGGAAACAAGTGAAAGTGGTCGCTGCCGAGGAGCCAAAAGGAGAAAATCTGGTTCTGTAAAGAGGTTCAACAAAGAGTTATATGCTGGTGAGCCTGCCAATACCCAAAACCCAATTGGAGCAGCTGTTGGTAAAGATGAGTCAGCACTACTATCACGGAATGCTGGTAGTGGTGGTAATCATGCCAGACCTGCTAGCAATATTGTAAAGATTATAAAACCAATAGGCTATTCAGCTTCCGTAGCCAGCGGAGCGCAGGATGTTTTGGTAACCTTTGTGGCTTCAAAGTCTGATGGAACAGAAGTGATGGTTAACAACAAGTATCTAAAAGCATTTAATCCACTTCTTCTCATCAATTTCTATGAGCAGCATCTTCGCTACAGCCCTACATCTTGA 1326 0.4729 MKGGGAKKKATADAPAEVVEPSAAADLGVGEGGSDKVQSFEGNEGTQLRNGEDEEPQVEDSEGEGEEGEGEGEEEYGVEGDEEEENAGGAFPGAQGVVLAENFYEVEAIRRKRVRKGQVQYFIKWNGWPETANTWEPPENLVSVPDIVEAFEESLRSGRHRKRKRKHVVHHTQPKKRLERSTTPYSLRRFSSTVGNHSQSALPVLSDASLPVIPAFPQTVLFADELGNGAGSNLESAAPVIVNKSPIVSEQNVERNEENDYDPKLSELKASSACGNDADRLAIRIPEAMPSGPGFAGNNGQTAAKPKVVRMETSESGRCRGAKRRKSGSVKRFNKELYAGEPANTQNPIGAAVGKDESALLSRNAGSGGNHARPASNIVKIIKPIGYSASVASGAQDVLVTFVASKSDGTEVMVNNKYLKAFNPLLLINFYEQHLRYSPTS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0847 441 Pfam Chromo (CHRromatin Organisation MOdifier) domain 104 153 IPR023780 -
Vra9g0847 441 ProSitePatterns Chromo domain signature. 121 141 IPR023779 -
Vra9g0847 441 SMART chromo_7 103 156 IPR000953 -
Vra9g0847 441 MobiDBLite consensus disorder prediction 55 86 - -
Vra9g0847 441 MobiDBLite consensus disorder prediction 159 180 - -
Vra9g0847 441 SMART ChS_2 367 440 IPR008251 GO:0005634
Vra9g0847 441 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 440 IPR044251 GO:0006325|GO:0031507
Vra9g0847 441 CDD CD_CSD 104 153 - -
Vra9g0847 441 MobiDBLite consensus disorder prediction 292 326 - -
Vra9g0847 441 Gene3D - 100 170 - -
Vra9g0847 441 PRINTS Chromodomain signature 101 109 IPR017984 -
Vra9g0847 441 PRINTS Chromodomain signature 114 128 IPR017984 -
Vra9g0847 441 PRINTS Chromodomain signature 129 141 IPR017984 -
Vra9g0847 441 ProSiteProfiles Chromo and chromo shadow domain profile. 104 163 IPR000953 -
Vra9g0847 441 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 440 - -
Vra9g0847 441 SUPERFAMILY Chromo domain-like 96 158 IPR016197 -
Vra9g0847 441 MobiDBLite consensus disorder prediction 159 174 - -
Vra9g0847 441 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0847 Vra-Chr9 9965984 9976882 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0847 - - gmx:100782342 538.88