Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0826 ATGTATCGGCAAGAAAAAGGTTTTCTTGCACCATGTATGTTTGGGAGGTCAATAGTTGGAACCCACATAACATTTCATAATGTGGTCAACTATGGTGCTCGTGGCGATGGAAAATCTGATGATTCCCATGCCTTTTTAAGGGCATGGAGAGACACGTGTCAAACAGCAGGGACACCAATTTTAGTTATACCAAAAAATGGAATATTCAAGGTGAAGAACATAAACCTGAGTGGTCCTTGCAAGGCCAAAAGTATTCATATTCAGCTTCGAGGGAAAATAGTTGCACCTCAGAGGAATGAATGGGCAAAAGGTCTGCAAGTTGATGATAAGTCCTCTTTAATTTTAATCTCACAAGTCAACAGTCTCACAATTCATGGAAGTGGACAAATCAATGGCTTTGGTTCTTCTTGGTGGAATTGCCCTTCTTGTCAAAGACCAAAGGTTATTAGTTTTGAACAATGCAATGATCTTAGAGTTCGTTATCTGAGCATAATTGACAGTCCACGAGCTCACGTAACAGTAGATGGTTGTAACAATGCTGTGTTCTCTCATATCCATATTCGTGCTCCTGGTGACAGCCCCAACACCGACGGATTTGACATTTCTGCTTCAAAATATATAACCATTCAAGATTCCATTATAGGAACTGGTGATGATTGTATTGCCATTAATGGTGGCTCCTCGTTCATCAATGCTACTAGAATTGCATGCGGACCAGGCCATGGAATAAGTGTTGGGAGCTTGGGAAGAAACAGGGAGCACGATACAGTTGAAGAAGTTTATGTGTGGAATTGCAGCTTCACAAACACACAAAATGGAGCAAGAATCAAGACATGGAAGGGTGGATCAGGTTTTGCAAGAAAAATCACTTATGAGAAAATCAGATTAACAAAGGCTTTCAACCCTATAATTATAGACCAGCACTATGAATATAATGATATCAAGGGTGGAGCAGTCAAAGTGAGTGATGTGACATTCAAAGGGTTTGAAGGAACAAGTGGAGATGAGAAAACTATTGACATAGATTGCGATTCATCAGGTTGTTTCAACATCGTATTGGAAGATATTAAGATTGTCTCTTCTGAACCAGGAAAACCAGCTTCCTGTTCTTGCAGTAATGCCCATGCAAAAACTACATCTACCACGCCAAATTGTAATTGCTTATTCAAATGA 1173 0.399 MYRQEKGFLAPCMFGRSIVGTHITFHNVVNYGARGDGKSDDSHAFLRAWRDTCQTAGTPILVIPKNGIFKVKNINLSGPCKAKSIHIQLRGKIVAPQRNEWAKGLQVDDKSSLILISQVNSLTIHGSGQINGFGSSWWNCPSCQRPKVISFEQCNDLRVRYLSIIDSPRAHVTVDGCNNAVFSHIHIRAPGDSPNTDGFDISASKYITIQDSIIGTGDDCIAINGGSSFINATRIACGPGHGISVGSLGRNREHDTVEEVYVWNCSFTNTQNGARIKTWKGGSGFARKITYEKIRLTKAFNPIIIDQHYEYNDIKGGAVKVSDVTFKGFEGTSGDEKTIDIDCDSSGCFNIVLEDIKIVSSEPGKPASCSCSNAHAKTTSTTPNCNCLFK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0826 390 PANTHER - 15 388 - -
Vra9g0826 390 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Vra9g0826 390 Gene3D - 20 387 IPR012334 -
Vra9g0826 390 SUPERFAMILY Pectin lyase-like 24 388 IPR011050 -
Vra9g0826 390 SMART pbh1 257 278 IPR006626 -
Vra9g0826 390 SMART pbh1 177 203 IPR006626 -
Vra9g0826 390 SMART pbh1 204 225 IPR006626 -
Vra9g0826 390 Pfam Glycosyl hydrolases family 28 53 377 IPR000743 GO:0004650|GO:0005975
Vra9g0826 390 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 15 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0826 Vra-Chr9 9707218 9712316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0826 25 385 Glycoside Hydrolase AT5G17200 41.860 1.01e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0826 K01184 - gmx:100782390 467.233