Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0825 ATGCAAAGACTAATTACTAGGGTTTTGATTCTTTGCTTCATTTCACAATGTTTATGTGACATTTCTATGGTTGAATCCGAAAATACAATTTATGATGTGAGGAACTATGGTGCCAATGGCAATGGAAAATCTGATGATTCTAACGCTTTTATGGATGCATGGAATGACATATGTGGAAGACAAGGGACACCAACTCTCTTGATACCAGAAAATAGAGTGTTCTTGGTGAAGAGGAACATAATCATGAAAGGTCCATGCAAGGCCACAAATATTAATATTCAGCTTCAAGGAAGAATAGTGGCACCACAAAAGAATGCATGGGAAGGTGATAAATCTACGATGATTTATTTCACAAACATAAACGGTCTCAGAATTGTCGGAAAAGGAGGATCAATCGATGGTTTTGGTTCCTCTTGGTGGCCATGCAAAAATTGTCCAAGACCAGCGGTCATTGGTTTCAATGCATGCAATGATCTTAGTGTTAGTTATCTGAGCATCACAAATAGTCCACAAGCTCACATAACCATAAATGGATGTAAGGATGCCATATTCTCCCATGTTAGCATTCGCTCTCCTGCTGATAGTCCTAACACTGATGGAATTGACATTTCTTCTTCCAAAAATATCTTCATAAAAGATTCCAACATAGCTTCTGGTGATGACTGTATTGCAATCATAGGTGACTCGTCTTACATTAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGTAGCCTGGGTAGAAACAATGACAACGTGGAACAAGTTCGTGTATATAATAGCAGCTTCACGAAGACTACAAATGGAGCAAGAATCAAGACATTTTCGGGTGGATCAGGTTATGCGAGAAGAATCACATTTGAGAAAATCACATTAAACCAAGTTTACAACCCAATAATTATAGATCAACACTATAATAACATAATGGTGACATTTCGTGGGTTTCGAGGAACATCTGCAAACGACAGAGCTATCGATTTAGCTTGTGGTTCACCAGGTTGCTTCAACATTTTGTTGGATGAAATCAAAATTGTTTCTTCTCAACCAGGAAAACCAGCTTCTTGTTCTTGTACTAATGTTCATGGAAGATCTACATCCACTATTCCAAATTGTAATTACTAA 1134 0.381 MQRLITRVLILCFISQCLCDISMVESENTIYDVRNYGANGNGKSDDSNAFMDAWNDICGRQGTPTLLIPENRVFLVKRNIIMKGPCKATNINIQLQGRIVAPQKNAWEGDKSTMIYFTNINGLRIVGKGGSIDGFGSSWWPCKNCPRPAVIGFNACNDLSVSYLSITNSPQAHITINGCKDAIFSHVSIRSPADSPNTDGIDISSSKNIFIKDSNIASGDDCIAIIGDSSYINATGIACGPGHGISIGSLGRNNDNVEQVRVYNSSFTKTTNGARIKTFSGGSGYARRITFEKITLNQVYNPIIIDQHYNNIMVTFRGFRGTSANDRAIDLACGSPGCFNILLDEIKIVSSQPGKPASCSCTNVHGRSTSTIPNCNY* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0825 377 Gene3D - 21 376 IPR012334 -
Vra9g0825 377 ProSitePatterns Polygalacturonase active site. 236 249 IPR000743 GO:0004650|GO:0005975
Vra9g0825 377 Pfam Glycosyl hydrolases family 28 58 366 IPR000743 GO:0004650|GO:0005975
Vra9g0825 377 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 374 - -
Vra9g0825 377 PANTHER - 1 374 - -
Vra9g0825 377 SUPERFAMILY Pectin lyase-like 23 372 IPR011050 -
Vra9g0825 377 SMART pbh1 257 278 IPR006626 -
Vra9g0825 377 SMART pbh1 179 205 IPR006626 -
Vra9g0825 377 SMART pbh1 206 227 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0825 Vra-Chr9 9702446 9706069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0825 1 375 Glycoside Hydrolase AT5G17200 40.143 1.70e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0825 K01184 - gmx:100801217 476.478