Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra9g0721 | ATGGGAATCCTCGCTTTGCCCTTAGTCATTTCCCTTCTCAAACCCAACGCCACCACTCGCCTCCGCCTCTCCCACTCCCTCCTCCGCCGCCGCCGCCACTTCGCCACCACCGTCTCCGCCACCACCACTCCTCATTCTCCTTCTTCACCGTCACCATCACCTTCACCTTCTCTCTCACGCCACTCTTCTGCTTCAACTCACTCTGACAATCGTTCCGTTAACTCCCGAAGCCTCACCTTCCAACAAGCCATTCAGCGCCTTCAGGAATACTGGGCCTCTGTTGGATGTTCCATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGCCCTGAACCATGGAATGTCGCGTATGTGGAACCCAGCATCCGCCCTGATGATAGTAGATATGGAGAAAACCCGAATAGACTCCAAAGACATACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCTCAGGATCTATTTATCCGCAGCCTCTCTGCTTTAGGTATTGATGTTGCTGCACATGATATACGATTTGTGGAAGATAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATTTGGATGGATGGTATGGAGATTACGCAATTCACCTACTTTCAGCAGGCTGGAAGTCTGCAGTTATCACCTGTATCTGTGGAAATTACTTATGGCCTTGAGCGTATCCTTATGTTACTGCAAGGTGTTGATCACTTCAAGAAGATAAAGTATTCTGATGGAATTACATATGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATACTACTTGGAGCATGCTAGTGTTGATCACGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCTCGTAGCTTACTTTCTTCTGGCTTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCCTAGACTCCAGAGGTTTTGTTGGAGTAACAGAGCGTGCTCGCTATTTTGGTCGCATGCGTAGTTTGGCTCGCCAATGTGCTCAACTTTGGTTGAAGACAAGGGAGATGCTTGGCTTTCCCCTTGGTTTTATCTCTGAACCTGATCATTTTGTGTTGCCAAAAGGAGTTTTGGAAGCTGCATGTGCGAAGGTCCATGATCATTCAAGAGTATTTGTTCTTGAAATTGGGACTGAAGAGATGCCACCTCAAGATGTTGTTGATGCCAGTAATCAACTGAAATATTTAATGCTGCAACTGCTTGAGCGGCAAAGGTTAAACCATGGTGAAGTGCAAGCATTTGGAACTCCACGTAGATTAGTGGTTGTTGTTGAAAATCTTTACACAAAACAGGCTGAAAAGGAGGTTGAAGTTCGAGGCCCTCCTGTTTCAAAAGCATTTGATCATGAGGGAAATCCAACAAAGGCCATTGAGGGTTTTTCTCGTAGATACTCTGTACCACTGGACCTAGTATTCAGAAAAGTCGATGGGAAAACAGAATATGTTTATGCACGTGTAAAGGAGTCTTCAAGATATGCTTTGGAGGTCTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAACTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTAGCTCTGCATGGAGATGTAGTAGTCCCATTTACGTTTGCTGGGGTGACAAGTGGAAACATGTCTTGCGGTCTTCGTAATACTTCTTCAGCTGTTGTCCAGGTGGAAAATGCAGAATCTTATTCAGTTGCAATTAACAATGCAGGAATCAAAGTTTCAGTTGAGGACCGTAAGAAAATTATTTTTGAACAGTCTAATGCATTAGCAAAAGGTGTAAATGGCCAAATTCTTATTCCAAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCTCCTTTTCCCGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTTTTAACAATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCGAATGGACAATTGTTGCCTTATTTCATTGCTGTTGCAAATGGAGCAATTGATGAGACTACTGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCAAAGTTCTTTTATGAGATGGACACTCGTAAGAGGTTTACAGAGTTCCGAAAACAACTGAAAAACATTCTATTTCATGAGAAGCTTGGGACCATGCTTGATAAGATGACTCGTGTTGAAAACATGGTTGCTGAACTAAGTTGCATCCTAGATATGAGTGAAGGTGTGCAAGATATTATCCGTGATGCTGCCTCTCTTGCAATGTCTGATCTTTCCACTGCTGTTGTCACTGAATTTACCTCACTTGCGGGAATTATGGGCCGCCACTATGCCCTTAGGGATGGATACTCAGAGCAGGTTGCAGAAGCCTTGTTTGAGATCACGCTTCCTAGATTTTCTGGGGACACGCTTCCTGAAAGTGATGCTGGCATAGTTTTAGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTTCTGCTGGTTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGCGAAGAATTTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAAATCTAGATTTTAAAAAGGCCCTGGAACTCGCTGCAGAAGTCCAGCCCATTAAAGTAGATCCTCATGTAATCGATGAAGTACTTCACTTTGTTACACGAAGATTGGAGCAATTTCTGGTTGACAAGGGGGTGAATGCAGAGTTTGTGCGGTCAATCCTTGTTGAAAGAGCAAATTTTCCCTGTCTTGCAGCAAAGTCAGCATATAAAATGGAAAAATTGTCAAGAGGGGACCTGTTTCCTAAAGTTGTTGAAGCATACTCCAGGCCAACTAGAATTGTCCGTGGGAAGGAAGTTGAACTTCATGCGGAGGTGGATGAGGCTGCTTTTGTGACAAATGAAGAGAGAGTTTTATGGAACACGTTTTTGTCTGTTAAAAAGAGTATCCATCCTGGTCTTGACATAGATGATTTTGTAGAAACTTCATGTCAGTTGATACAGCCACTTGAGGATTTCTTCAATAATGTCTTTGTAATGGTGGACGATGAGAAGATCAGAGTAAACAGGTTAACTTTGCTAAAAGGAATTGCTGATCTTCCTAAAGGAATAGCAGACCTCACTGTTCTACCTGGATTTTAA | 3225 | 0.4279 | MGILALPLVISLLKPNATTRLRLSHSLLRRRRHFATTVSATTTPHSPSSPSPSPSPSLSRHSSASTHSDNRSVNSRSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVAAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGFAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDHFVLPKGVLEAACAKVHDHSRVFVLEIGTEEMPPQDVVDASNQLKYLMLQLLERQRLNHGEVQAFGTPRRLVVVVENLYTKQAEKEVEVRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVFRKVDGKTEYVYARVKESSRYALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFTFAGVTSGNMSCGLRNTSSAVVQVENAESYSVAINNAGIKVSVEDRKKIIFEQSNALAKGVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFIAVANGAIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFTEFRKQLKNILFHEKLGTMLDKMTRVENMVAELSCILDMSEGVQDIIRDAASLAMSDLSTAVVTEFTSLAGIMGRHYALRDGYSEQVAEALFEITLPRFSGDTLPESDAGIVLAIADRLDSLVGLFSAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKKALELAAEVQPIKVDPHVIDEVLHFVTRRLEQFLVDKGVNAEFVRSILVERANFPCLAAKSAYKMEKLSRGDLFPKVVEAYSRPTRIVRGKEVELHAEVDEAAFVTNEERVLWNTFLSVKKSIHPGLDIDDFVETSCQLIQPLEDFFNNVFVMVDDEKIRVNRLTLLKGIADLPKGIADLTVLPGF* | 1075 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra9g0721 | 1074 | Pfam | Glycyl-tRNA synthetase beta subunit | 393 | 936 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | MobiDBLite | consensus disorder prediction | 55 | 75 | - | - | |
| Vra9g0721 | 1074 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 390 | 1071 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | TIGRFAM | glyS: glycine--tRNA ligase, beta subunit | 391 | 1071 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | MobiDBLite | consensus disorder prediction | 36 | 75 | - | - | |
| Vra9g0721 | 1074 | CDD | GlyRS_alpha_core | 79 | 357 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 282 | 361 | - | - | |
| Vra9g0721 | 1074 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 79 | 353 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 132 | 147 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 153 | 173 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 184 | 208 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 210 | 230 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 233 | 248 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 318 | 334 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | Pfam | Glycyl-tRNA synthetase alpha subunit | 80 | 357 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | Gene3D | Bira Bifunctional Protein; Domain 2 | 64 | 281 | IPR045864 | - | |
| Vra9g0721 | 1074 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 744 | 1036 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | PANTHER | GLYCYL-TRNA SYNTHETASE | 390 | 1074 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | SUPERFAMILY | Class II aaRS and biotin synthetases | 79 | 357 | IPR045864 | - | |
| Vra9g0721 | 1074 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 78 | 358 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Vra9g0721 | 1074 | SUPERFAMILY | HD-domain/PDEase-like | 721 | 852 | - | - | |
| Vra9g0721 | 1074 | TIGRFAM | glyQ: glycine--tRNA ligase, alpha subunit | 79 | 363 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra9g0721 | K14164 | - | gmx:100787365 | 1880.53 |