Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0686 ATGTCGAAGGTTGAAAGCAGCATGGCTCGGGTGGTTCTGGAGCCACACGCGCAGTTCGACCTCACCGCCCACTCACGCGCCAGTTCTATTCGATCGCTCGCACTTGCCACACTGCCGGATGCGAGACGGGATCGTTCTACTGTCCTCTACGTCGGAACTAACTCTGGAACCCTCTTCTCCCTATCGGCGGACACCGACGACGGTGACGGCGCCCCGAACGATGCCGTTCTGCGGAAGCTCTCGTTTCTGCGGAGCGTTTCGGTGAGCGACGCCGCAGTCGAGTGCATTTCGGTGATCGAGGAGTTCGGGAAGGTTCTGTTGCTCTCCAATGGGGCTTTGTTCTTGGTGGACTCGGAGCTCTCGAATCGCGCTTCGAAATTGAGTTTCTCGAAGGGAGTATCTTTGGTCACGAGGAGGAGGTTTAGGAACGGCGAATCCGAGAGTTTGGGTTTGGGTTTGGGTTCGGGTTCGGGGCTAGGTTCGGGGTTAGGGTTGTTTCAGAAATTGAGAATGAACTCAGTGAAGGAGGGTGAAATGCAGAGTGAGGGTGGTTGTGTTTTTGCGGTTGTTGTTGGGAAGAGGTTGATTCTTGCGGAGCTTGTCTTGGGGAATAGGAATGGGAAAAATGAGAGGGATGATGGTGGTGGTGGCTCTCTTGTGGTTTTGAAGGAGATTCAGTGTATTGATGGGGTTGTTAGTGCCATGGTGTGGCTTAATGATTCTATTGTTGTTGGTACTGTAAATGGGTATAGTTTGATTTCTTGTGTAACTGGGCAGAGCAGTGTGATCTTCTCGCTTCCGGATGTGTCGCGGCCGCCAAGGTTGAAGCTTTTGCACAAGGAGTGGAGGGTGCTGTTGTTGGTGGACAATGTGGGGGTTATTGTTGACGCACATGGGCAGCCGGTGGGAGGGAGTCTGGTGTTCCGGCATGGGTTGGATTCAGTTGGAGAGATCGGTTCTTATGTGGTTGTGGTGAGTGATGGGAAGATTGAGTTGTATCATAAGAGGTATGGTGGGTGTGTTCAGGTTTTGCCGTTTGGTGGGGAAGGAGTTGGGCGATGCGTTGTTGCTAGCGAGGAAGATAGGGATGGGAGGATTGTTGTTGTTGCCACTGCTACCAAGGTAGTGTGCTATCAGAAATTACCTTCTGTAGAACAAATAAAAGACCTTCTGAGGAAGAAGAACTATAAGGGAGCCATATCCTTGGTGGAGGAGCTTGAGTCAGAAGGGGAAATGTCAAAAGATTTGCTGTCGTTTGTTCATGCTCAAGTGGGATTCCTCTTGCTTTTTGACTTGCATTTTAAAGAAGCAGTGGACCACTTCTTGCTTTCTGACACGATGCAACCTTCTGAAGTATTCCCATTTATAATGCGTGATCCAAATCGGTGGTCCTTACTGGTTCCTAGGAATAGGTATTGGGGTTTGCATCCTCCACCAGCCCCCCTTGAAGATGTTATAGATGATGGCTTGATGACAATCCAAAGAGCTTCTTTTCTGAGGAAAGCAGGTGTAGAAACAATAGTAGATAATGATCTATTTCTCAATCCAGTGAATAGAGCTGATTTGTTGAAGTCAGCAATCGAGAACATTAGTAGGTATTTGGAGGCCTGTCGAGAAAAAGACCTAACAGAATCAGTCAGGGAGGGAGTTGACACTCTACTAATGTATCTCTATAGAGCTCTAAATTGTGTTGAGGACATGGAGAGGCTGGCATCTTCTACAAACTGGTGTGTTGTGGAGGAATTGGAGCAGATGTTAGAAGAGTCTGGGCACCTACGGACACTTGCCTTCTTGTGTGCAAGTAAAGGAATGAGCTCAAAAGCTGTGCATATTTGGCGCATCCTTGCAAGAAATTATTCATCTGGCCTGTGGAAAGACCCTGCTTTGGAGAATAGCACGCAGGACAGTGGGGAAAGCCTCATTTCTGGCAGGTCAATTGCTGCAGCTGAAGCATCAAAGATTCTTGAGGAATCTTCTGATCAAGAGTTGATTCTACAGCATCTAGGATGGATTGCTGATATTAGCCAGGTTCTTGCAGTCAAAGTTTTAACTTCAGAGAAACGAGAGATCCATCTTTCTCCTGATGAAGTTGTTACAACCATTGATCCGCAGAAGGTAGAAATTCTACAGAGGTATCTCCAGTGGTTGATTGAAGATCAGGACTGTAATGATACACAGTTGCATACGTTGTATGCCCTCTCACTTGCCAAATCAGCAATTGAAGTCTTTGAATCTGAAAATATCTCTAAGAATCTGGATAGTGAAAATACGGAGACAAGAAGTTTGGCTGTGTCCAAAAACTCAATCTTTGACACTCCTGTCAGGGAAAGATTGCAGATTTTTTTGCAATCCTCAGACTTGTATGATCCAGAAGAAGTTCTTTATTTGATTGAAGGATCAGAATTGTGGTTAGAGAAGGCTATTCTATATAGAAGACTGGGGCAGGAGACTTTGGTCCTCCAAATTTTGGCTTTGAAACTTGAAGACAGTGAAGCTGCTGAGCAGTATTGTGCTGAGATAGGAAGGGCTGATGCATACATGCAGTTGCTTGAAATGTATTTGGACCCACAAGATGGTAAGGATCCCATGTTTACTGCTGCTGTTCGCCTACTCCATAATCATGGAGAATCATTAGATCCGTTGCAAGTTTTAGAGAAACTATCTCCAGATATGCCACTTCAACTTGCTTCTGATACTTTACTAAGAATGTTCAGGGCCAGAGTTCATCATCATCGTCAAGGACAGATTGTGCATAATTTATCTCGTGCTGTGGACATTGATGCAAGATTATCAAGATTGGAGGAGAGGTCAAGGCATGTTCAAATTGATGATGAGAGTCTCTGTGATTCCTGTGATGCACGCCTTGGTACGAAGCTATTTGCAATGTATCCTGATGACACTGTTGTATGTTACAAGTGTTACCGTCGTCAAGGTGAGTCAGTGTCTGTATCAGGCCGCAATTTTAAGGAAGACATCCTATTTAAACCGGGTTGGCTCGTGAGTAGATGA 3009 0.4613 MSKVESSMARVVLEPHAQFDLTAHSRASSIRSLALATLPDARRDRSTVLYVGTNSGTLFSLSADTDDGDGAPNDAVLRKLSFLRSVSVSDAAVECISVIEEFGKVLLLSNGALFLVDSELSNRASKLSFSKGVSLVTRRRFRNGESESLGLGLGSGSGLGSGLGLFQKLRMNSVKEGEMQSEGGCVFAVVVGKRLILAELVLGNRNGKNERDDGGGGSLVVLKEIQCIDGVVSAMVWLNDSIVVGTVNGYSLISCVTGQSSVIFSLPDVSRPPRLKLLHKEWRVLLLVDNVGVIVDAHGQPVGGSLVFRHGLDSVGEIGSYVVVVSDGKIELYHKRYGGCVQVLPFGGEGVGRCVVASEEDRDGRIVVVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELESEGEMSKDLLSFVHAQVGFLLLFDLHFKEAVDHFLLSDTMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVIDDGLMTIQRASFLRKAGVETIVDNDLFLNPVNRADLLKSAIENISRYLEACREKDLTESVREGVDTLLMYLYRALNCVEDMERLASSTNWCVVEELEQMLEESGHLRTLAFLCASKGMSSKAVHIWRILARNYSSGLWKDPALENSTQDSGESLISGRSIAAAEASKILEESSDQELILQHLGWIADISQVLAVKVLTSEKREIHLSPDEVVTTIDPQKVEILQRYLQWLIEDQDCNDTQLHTLYALSLAKSAIEVFESENISKNLDSENTETRSLAVSKNSIFDTPVRERLQIFLQSSDLYDPEEVLYLIEGSELWLEKAILYRRLGQETLVLQILALKLEDSEAAEQYCAEIGRADAYMQLLEMYLDPQDGKDPMFTAAVRLLHNHGESLDPLQVLEKLSPDMPLQLASDTLLRMFRARVHHHRQGQIVHNLSRAVDIDARLSRLEERSRHVQIDDESLCDSCDARLGTKLFAMYPDDTVVCYKCYRRQGESVSVSGRNFKEDILFKPGWLVSR* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0686 1002 PANTHER CNH DOMAIN CONTAINING 9 991 IPR032914 GO:0016192
Vra9g0686 1002 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 682 862 IPR000547 GO:0006886|GO:0016192
Vra9g0686 1002 PANTHER VAM6/VPS39-LIKE PROTEIN 9 991 - -
Vra9g0686 1002 Pfam Vacuolar sorting protein 39 domain 2 868 975 IPR019453 -
Vra9g0686 1002 Pfam CNH domain 48 344 IPR001180 -
Vra9g0686 1002 SUPERFAMILY WD40 repeat-like 27 383 IPR036322 GO:0005515
Vra9g0686 1002 Pfam Vacuolar sorting protein 39 domain 1 550 624 IPR019452 -
Vra9g0686 1002 ProSiteProfiles Citron homology (CNH) domain profile. 27 359 IPR001180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0686 Vra-Chr9 7844086 7857649 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0686 K20177 - gmx:100819895 1729.53