Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0671 ATGTTCCTTTCACTCACGTATTCGTTCACTTTCTTCTTCACTCTCATCCTCACATCGTCATCACCTTCACACATTGCAAAATTCACACCACCAGCCACCAAAATATCCATCACAAGCCGCAACATTCAAAGCCTCAACAATGCTGACAAAGGGACTAAAATCGCAGGTATATCGCAGTTTAAACGATATCTACATCGTTTTGGGTACCTAGAAAACAACAACAGTAACAGTTTTGACGATGAATTTGATGTCGTGTTGGAATCTGCTCTGGTTAGATACCAAGGAAACCTTGGTCTCCAAGTAACCGGGAAGCTCGACTCCGACACGGTTGCTCAAATGATCACACCAAGATGTGGTGATCCAGACACAAACGCAAGACACCAGAATCATGTCCACAAAGTGCATTCTTCAAAGAACTTCGTGTTTTTCTCCGGGAAACCACGTTGGTCACGTTCAATGCCGATGACACTTACCTATGCTTTCTCACGTGAGAACATGATCCACAGTTTGAGCATGAAAGACATAAGAGAGGCGTTCCGACGTGCATTCTTGAGATGGGCTTCGGTTATTCCTGTTAGCTTTGCTGAGGTGAGTGACTCCGAAGTTTCTGATTTGAAAATAGGGTTTTACAAAGGGGAGCATGGTGATGGTGAACCCTTTGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATCGGGCGCCTCCACCTTGACGCGGCAGAGACATGGGCGGTGGACTTTGAGGCCACCGTGTCGGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGTTAGGATTGTCTCATAGTTCTGTGAAAGAGGCTGTGATGTATCCGAGTTTGAGGCCAAGAGATAAGAGGGCTAATCTCAACATTGATGACATAAAGGGAGTGCAATCTCTGTATGGATCAAACCCTAATTTCAGATCAGAGTGGTCACTAGAATCTGATATCTCGGCAAATAAAGCTTCCAACTTTCTCAAACCTTTGAGATTGGCTTCTACTTTGATAATTATAATTTCTCTCATGCATAGTTTATGTACATTATACTTCATTTGA 1083 0.4515 MFLSLTYSFTFFFTLILTSSSPSHIAKFTPPATKISITSRNIQSLNNADKGTKIAGISQFKRYLHRFGYLENNNSNSFDDEFDVVLESALVRYQGNLGLQVTGKLDSDTVAQMITPRCGDPDTNARHQNHVHKVHSSKNFVFFSGKPRWSRSMPMTLTYAFSRENMIHSLSMKDIREAFRRAFLRWASVIPVSFAEVSDSEVSDLKIGFYKGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEATVSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPNFRSEWSLESDISANKASNFLKPLRLASTLIIIISLMHSLCTLYFI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0671 360 Pfam Matrixin 149 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vra9g0671 360 PRINTS Matrixin signature 113 126 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vra9g0671 360 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vra9g0671 360 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vra9g0671 360 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vra9g0671 360 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vra9g0671 360 PANTHER MATRIX METALLOPROTEINASE 11 351 - -
Vra9g0671 360 SMART col_5 145 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vra9g0671 360 Gene3D Collagenase (Catalytic Domain) 48 316 IPR024079 GO:0008237
Vra9g0671 360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 141 314 - -
Vra9g0671 360 PANTHER METALLOENDOPROTEINASE 4-MMP 11 351 - -
Vra9g0671 360 CDD ZnMc_MMP 148 311 IPR033739 GO:0008237|GO:0008270
Vra9g0671 360 SUPERFAMILY PGBD-like 59 123 IPR036365 -
Vra9g0671 360 Pfam Putative peptidoglycan binding domain 56 113 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0671 Vra-Chr9 7636853 7638052 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0671 - K07999 gmx:100781237 565.074