Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra9g0669 | ATGGGGAAAATCCCTCCGTCGTTTCGCTCTGCAATCGGAAACCCTAACATTCGAAACCCTTCTTCTCTGTTCCGCCCTCAACCACCTTCTCCTCCCTCCAAACCATTCCCTCCCACCAAGAAAAAATCCCCAAAACCCATCCCACAACAACCAAACCCTCTCTTCAAATCCCCAAATCTCGAAGATGCCAAGAAAATCTTCGACTCCATCGCCAATTCCTCCAAAGACCCTCGCTTTCCCAATTCCCTCCTCCACTCCTACGCCAAAATCGCCACCTCCACCTCCGACTCCGTCAAATTCCTCCACCACATCACCAAAACCCTCCCTTCTTTCTCCCCCGATCATTCCACCTTCCACATTCTCCTTTCCCACTCCTGCACCAACCCCGATTCCAATTCCAATTCCGCTCTCTCCGCAATCCACCAAACTCTAAATTCAATGCGCGCCGCCGGCGTCACTCCGGATGCTGCCACAGCTGATGTTTCGGTCCGCGCCTTGTGCTCCGCCGGCCACCTTGACCATGCCGTTGACTTGATCAAAGAATTCGCCTCCAAGCACTGCCCTCCGGACACCTACACCTTCAATTTCCTAGTCAAGCACCTCTGCAAAGCCCGCGCCTTGTCCACTGTTTACGCCTTCATCGACGAAATGCGTGAAAAATTCGGTGTGAAGCCTGATCTTGTTACATACACTATCCTGATTGACAATGTGTGTAATGGTAAGAACTTGAGAGAGGCAATGAGGCTGGTGAGTGTGCTTCATGAGGAAGGGTTTAAGCCTGATTGCTTTGTGTATAACACGATTATGAAAGGGTATTGTGTGTTGAGCAGAGGGAGTGAGGCGATTGAGGTTTATAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTTACTTACAACACTTTGATTTTTGGGTTGTCCAAGTCGGGGCGGGTGGTGGAGGCGAAGAAGCTGCTGCGTGTGATGACAGAGAAGGGTTATCTTCCTGATGAGGTGACTTATACTACATTGATGAATGGAATGTGTCGGAAGGGGGAGGCTCTGGCGGCGCTGGCATTGCTGGGGGAGATGGAGGGGAAGGGGTGCAGCCCCAATGAATGCACATATAACACACTGCTGCACGGGTTGTGCAAGGCGAGGTTGTTGGAGAAGGCGACTGAGTTCTATGGTGTGATCAAGGAAGGTGGTTTGAAGCTTGATACTGCTTCCTATGGGACACTTGTGAGGGCACTCTGTAGGGATGGCAGAGTTGCCGAGGCTTATGAGGTGTTTGATTATGCTGTTGCGAGCAAGAGCTTGACTGATGTTGCTGCTTACTTGACGTTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCCAAAGAACAAGGGCTTGCTGTTTAA | 1383 | 0.5098 | MGKIPPSFRSAIGNPNIRNPSSLFRPQPPSPPSKPFPPTKKKSPKPIPQQPNPLFKSPNLEDAKKIFDSIANSSKDPRFPNSLLHSYAKIATSTSDSVKFLHHITKTLPSFSPDHSTFHILLSHSCTNPDSNSNSALSAIHQTLNSMRAAGVTPDAATADVSVRALCSAGHLDHAVDLIKEFASKHCPPDTYTFNFLVKHLCKARALSTVYAFIDEMREKFGVKPDLVTYTILIDNVCNGKNLREAMRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVVEAKKLLRVMTEKGYLPDEVTYTTLMNGMCRKGEALAALALLGEMEGKGCSPNECTYNTLLHGLCKARLLEKATEFYGVIKEGGLKLDTASYGTLVRALCRDGRVAEAYEVFDYAVASKSLTDVAAYLTLESTLKWLKKAKEQGLAV* | 461 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 401 | 435 | IPR002885 | - | |
| Vra9g0669 | 460 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Vra9g0669 | 460 | Gene3D | Tetratricopeptide repeat domain | 289 | 357 | IPR011990 | GO:0005515 | |
| Vra9g0669 | 460 | Gene3D | Tetratricopeptide repeat domain | 358 | 429 | IPR011990 | GO:0005515 | |
| Vra9g0669 | 460 | Gene3D | Tetratricopeptide repeat domain | 210 | 288 | IPR011990 | GO:0005515 | |
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 226 | 260 | IPR002885 | - | |
| Vra9g0669 | 460 | MobiDBLite | consensus disorder prediction | 22 | 53 | - | - | |
| Vra9g0669 | 460 | Pfam | PPR repeat family | 330 | 379 | IPR002885 | - | |
| Vra9g0669 | 460 | Pfam | PPR repeat family | 193 | 239 | IPR002885 | - | |
| Vra9g0669 | 460 | Pfam | PPR repeat family | 260 | 309 | IPR002885 | - | |
| Vra9g0669 | 460 | Gene3D | Tetratricopeptide repeat domain | 53 | 209 | IPR011990 | GO:0005515 | |
| Vra9g0669 | 460 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 332 | IPR002885 | - | |
| Vra9g0669 | 460 | TIGRFAM | PPR: pentatricopeptide repeat domain | 368 | 401 | IPR002885 | - | |
| Vra9g0669 | 460 | TIGRFAM | PPR: pentatricopeptide repeat domain | 333 | 367 | IPR002885 | - | |
| Vra9g0669 | 460 | TIGRFAM | PPR: pentatricopeptide repeat domain | 264 | 296 | IPR002885 | - | |
| Vra9g0669 | 460 | TIGRFAM | PPR: pentatricopeptide repeat domain | 228 | 262 | IPR002885 | - | |
| Vra9g0669 | 460 | TIGRFAM | PPR: pentatricopeptide repeat domain | 404 | 427 | IPR002885 | - | |
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 366 | 400 | IPR002885 | - | |
| Vra9g0669 | 460 | Pfam | PPR repeat | 164 | 185 | IPR002885 | - | |
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 155 | 189 | IPR002885 | - | |
| Vra9g0669 | 460 | Pfam | PPR repeat | 397 | 427 | IPR002885 | - | |
| Vra9g0669 | 460 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 1 | 459 | - | - | |
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 331 | 365 | IPR002885 | - | |
| Vra9g0669 | 460 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Vra9g0669 | 460 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 1 | 459 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra9g0669 | 243 | 457 | Glycosyltransferase | AT1G05670 | 32.420 | 6.97e-24 | 103 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra9g0669 | - | - | gmx:100782321 | 722.62 |