Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0663 ATGGAGCCTTCACTCATACTATCTTCACCTTCATCATCCACCCCTTTACCTTTCTTCATCTCAAACACTCTTCCTTTCCATGCAAAACCCAATCTTTCCGTCAAACTCAATTGCACCCTGCAAAAGTCCCAGTTTTGGGGAAGAAATTTGAGTTGGGTCCCATCACAATTGCCGCATGGAAGACCGAAATTTGATGCGGCGAGCCCCATAATAACAGCGGCGGTGAAGAGAAGGAAAGAGATTCCGTTTGACAACGTGATTCAGAGAGACAAGAAGCTGAAATTCGTTCTGAGGGTGAGGAATATTCTGGTGGCTCAACCAGATAGGGTTATGTCGCTTAAGCAGCTTGGCAAGTTCAAAAGAGATTTGGGGCTCGATAAAAGGAGGAAACTTATTGCCATATTGAAGAAATTCCCAGCAGTGTTTCAGATTATGGAAGAAGGGGTTTACTCTCTGAAATTCAAAATGACCCCTGAAGCTGAGAGACTCTATTTTGAGGAGCTGAAGATTAGGAATGAGTTGGAAGACTTGGTGGTCGTCAAACTCAGGAAGTTGTTGATGATGTCACTGGAAAAACGGATTTTGTTGGAGAAAATTGCACATCTCAGGACTGATTTTGGTCTCCCCCTGGGATTTCGTGACACCATTTGTCATAGGTACCCTCAGTACTTCAAAGTGGTTGCAACTGAGCGTGGCCCTGCCTTGGAACTAACTCATTGGGACCCTGAGCTTGCGGTTTCAGCGGCTGAGCTATCGGCTGAGGATAATCGCATCAGGGAAATGGAGGAGCAGAATTTGATCATAGACAGACCTCCCAGGTTCCACAGGGTGAAGCTTCCTAAGGGTCTTAATCTTTCCAAGGGTGAGATGAGGAAGATTATGCAATTCAGAGACTTGCCTTATATTTCGCCTTATTCTGATTTCTCTGCACTGAGGGCAGGGACAAGGGAGAAGGAAAAGCATGCTTGTGGAGTTGTTCATGAGATTCTGAGTCTCACACTTGAGAAGCGGACGCTTGTTGATCACTTCACACATTTTCGAGAGGAGTTCAGATTCTCTCAGCAGCTGAGGGGGATGTTGATAAGGCATCCTGATATGTTTTATGTCTCTCTGAAAGGAGATAGAGATTCTGTGTTTCTGAGGGAAGCTTACCGGGACTCTCAGTTGGTGGACAAGGATCGGTTGTTGCTTGTAAAGGAAAAGCTTCGTGTTCTGGTTAATGTTCCGCGATTCCCCAAGGGACCTGCTCGCAAGACCCTTGAAGATAGCTTGAGAGAAGGTGGTGGCAGAGAAGAGGAAAGTGATCAAGGGGAAGAAGCATGGTCAGAAGAAGTTGATAATTTAGTGAGTGACGAAGGATTTGAGGATTTTGATGGTGCTGATGATGGCTGGAGTGATGAAGACGATGACAGTTTGCCACCAGATTTTGATGACGATGATGAAGTAATGGAGATTGGACAAGGAAAGGCAAATAAACAAGTTAAATACACGAGACAGAATGATGAAGAGGCCCTTCTTCCTGTATTCTCCGATGGCCGTCCCAGAGAACAGTGGTGA 1557 0.4554 MEPSLILSSPSSSTPLPFFISNTLPFHAKPNLSVKLNCTLQKSQFWGRNLSWVPSQLPHGRPKFDAASPIITAAVKRRKEIPFDNVIQRDKKLKFVLRVRNILVAQPDRVMSLKQLGKFKRDLGLDKRRKLIAILKKFPAVFQIMEEGVYSLKFKMTPEAERLYFEELKIRNELEDLVVVKLRKLLMMSLEKRILLEKIAHLRTDFGLPLGFRDTICHRYPQYFKVVATERGPALELTHWDPELAVSAAELSAEDNRIREMEEQNLIIDRPPRFHRVKLPKGLNLSKGEMRKIMQFRDLPYISPYSDFSALRAGTREKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRVLVNVPRFPKGPARKTLEDSLREGGGREEESDQGEEAWSEEVDNLVSDEGFEDFDGADDGWSDEDDDSLPPDFDDDDEVMEIGQGKANKQVKYTRQNDEEALLPVFSDGRPREQW* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0663 518 Coils Coil 244 264 - -
Vra9g0663 518 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 12 468 IPR040293 GO:0000373|GO:0003723
Vra9g0663 518 Pfam Plant organelle RNA recognition domain 80 407 IPR021099 GO:0003723
Vra9g0663 518 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 12 468 IPR045040 GO:0003723
Vra9g0663 518 MobiDBLite consensus disorder prediction 416 482 - -
Vra9g0663 518 MobiDBLite consensus disorder prediction 416 435 - -
Vra9g0663 518 MobiDBLite consensus disorder prediction 436 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0663 Vra-Chr9 7558349 7560328 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0663 - - gmx:100810556 805.438