Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0620 ATGGGGGAAGCTACACAGAGGTATGCAGTAGTGACAGGAGCAAATAAAGGGATTGGATTAGAGATAGTTAGGCAGTTAGCTTCAGAAGGAATAAAAGTGGTACTCACTGCAAGGAATGAAGAGAGGGGTCTTCAAGCATTGGAAACACTCAAAGACTCTGCTCTTTCTCATCTAGTCTTGTTTCATCAGCTAGATGTGGCTCATGCTGCAAGTGTAGCTGCTTTTGCAGATTTTATCAAATCCAAATTTGGTAAACTTGATATTCTGGTTAATAATGCGGGAATCAGTGGAGTTGTAATTGAAGACAGAGACTTAATCACTACAGTCCTTGTGAATCGTGGGGTGATATCTGATGAGGAAGGACCAAGGGCAATGACTCAAACATATGAGTTAGCAGAAGAATGCTTGCAAATAAATTACTATGGCGCTAAAATAACTATAGAATCCCTTATGCCACTCCTGCAATTATCTGACTCGCCAAGAATTGTGAATGTGTCATCCACTCTAGGGCAGTTAGAGAGTTTCCCTAAAGAATCATGGGCAAGAGGAGTGTTCAGAGATGTTGATAACCTGACAGAAGAGAAAATGGATGAAATAGTGAAGAAATTTCTAAGTGATTTCAAAGAAGGTTCATTAGAGAGTAAAGGGTGGCCAAAGCATCTAGGTGCCTATATTGTATCGAAAGCTGCTATGAATGGGTACACGAGAATC 711 0.4051 MGEATQRYAVVTGANKGIGLEIVRQLASEGIKVVLTARNEERGLQALETLKDSALSHLVLFHQLDVAHAASVAAFADFIKSKFGKLDILVNNAGISGVVIEDRDLITTVLVNRGVISDEEGPRAMTQTYELAEECLQINYYGAKITIESLMPLLQLSDSPRIVNVSSTLGQLESFPKESWARGVFRDVDNLTEEKMDEIVKKFLSDFKEGSLESKGWPKHLGAYIVSKAAMNGYTRI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0620 237 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vra9g0620 237 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vra9g0620 237 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 237 IPR002347 -
Vra9g0620 237 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 237 - -
Vra9g0620 237 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 236 IPR036291 -
Vra9g0620 237 Pfam short chain dehydrogenase 8 173 IPR002347 -
Vra9g0620 237 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vra9g0620 237 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vra9g0620 237 PRINTS Glucose/ribitol dehydrogenase family signature 224 237 IPR002347 -
Vra9g0620 237 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 237 - -
Vra9g0620 237 Gene3D - 3 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0620 Vra-Chr9 7126830 7129394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0620 3 105 Acyl Lipid Metabolism Gene Families AT1G63380 35.398 9.02e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0620 K15095 - gmx:100801677 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0620 9 7126830 7129394 Vra9g0620 9 7126830 7129394 ECH