Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0619 ATGGGAGAAGCTACACAGAGGTATGCAGTTGTGACAGGAGCAAATAAAGGGATTGGATTAGAGATAGTTAGGCAGTTAGCTTCAGAAGGAATAAAAGTGGTACTCACTGCAAGGAATGAAGAGAGGGGTCTTCAAGCATTGGAAACACTCAAAGCCTCTGCTCTTTCTCATCTACTCTTCTTTCATCAGCTAGATGTGGCTCATCCTGCAAGTGTAGCTGCTTTTGCACATTTTATCAAATCCAAATTTGGTAAACTTGATATTCTGGTTAACAATGCGGGAATCAATGGAGTTGTAATTGAAGATAGAGACTTAATTACTACCGTCATCGTGAATCGTGGGGTGGTACCAGATGAGGAAGGAACAAAGGCAGTGACTCAAACATATGAGTCAGCAGAAGAATGCTTGCAAATAAATTACTATGGCGCTAAAATAACTATTGAATCCCTTATGCCCCTCCTTCAATTATCTGACTCGCCCAGAATTGTAAATGTATCATCCACTCTGGGGCAGTTAGAGAGTTTCCCAAAAGAATCATGGGCAAGAGGAGTGTTCAGCGATGTTGATAACCTGACAGAAGAGAAAATGGATGAAATAGTGAAGAAATTTCTAAGTGATTTCAAAGAAGGTAGATTAGAGAGTAAAGGGTGGCCAAAGCATCTAGGTGCCTATATTGTATCGAAAGCTGCTATGAATGGGTACACGAGAATCCTTGCAAAGAAACATCCATCATTCTGCATAAACAGTGTTTGCCCTGGTTATGTGAAGACAGATATAACATCAAACACTGGTTTTCTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTCAAGCTTGCACTTCTTCCCAATGGTTCTCCATCTGGTCTCTTCTATTTCAGAACTGATGTTGCTTTCTTTTGA 900 0.4067 MGEATQRYAVVTGANKGIGLEIVRQLASEGIKVVLTARNEERGLQALETLKASALSHLLFFHQLDVAHPASVAAFAHFIKSKFGKLDILVNNAGINGVVIEDRDLITTVIVNRGVVPDEEGTKAVTQTYESAEECLQINYYGAKITIESLMPLLQLSDSPRIVNVSSTLGQLESFPKESWARGVFSDVDNLTEEKMDEIVKKFLSDFKEGRLESKGWPKHLGAYIVSKAAMNGYTRILAKKHPSFCINSVCPGYVKTDITSNTGFLTVEEGAASPVKLALLPNGSPSGLFYFRTDVAFF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0619 299 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 297 - -
Vra9g0619 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Vra9g0619 299 Gene3D - 3 299 - -
Vra9g0619 299 Pfam short chain dehydrogenase 8 173 IPR002347 -
Vra9g0619 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Vra9g0619 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vra9g0619 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vra9g0619 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Vra9g0619 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Vra9g0619 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vra9g0619 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vra9g0619 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Vra9g0619 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0619 Vra-Chr9 7099899 7102120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0619 3 105 Acyl Lipid Metabolism Gene Families AT1G63380 36.792 2.58e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0619 K15095 - gmx:100801677 489.574