Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0613 ATGGGAGAAGCAGCAAAAAGGTATGCTGTAGTGACAGGAGCTAACAAGGGGATTGGTTATGGAATATGCAAGAAACTGGCTTTGAATGGAATAGTGGTGGTGCTAACAGCAAGAAATGAAAAAAGGGGTTTGGAAGCAGTGGAAAGATTGAAAGAGTTTGGACTATCAGACTTTGTGGTTTTTCATCAACTTGATGTGACAGACCCTTCCAGTGTTACTTCCTTATCACATTTCATCAAAACCAGATTTGGAAAACTTGATATATTGGTGAATAATGCAGGTGTTCCTGGGGGAATAGTTAATGCAGAGAATTACCTTAGAAGGAAAAGGGGTGAAATATTCGATTGGAATCTGATAGTGTATCAAAATTATGAGTTAGCCAAAGAATGTGTTGAAACAGATTTCTTTGGTGCAGAGAGAGTAACTGAAGCTCTTCTTCCTCTGCTCCAACTCTCCACTTCACCAAGGATTGTCAATATCTCTGGTCAAATAGGACTATTGAAGCACATACCAAATGAGTGGGCAAGAGGAGTTTTGAGTGACATTGAGAATCTGACAAATGAAAAACTTTATGAAGTGCTTAGAGAGTTTCTGAAAGATTACAAAGAAGGATCATTAGAATCGAAAAATTGGCCAGCTGTGGTTTCTGGGGTGACGATGGCAAAAGCAGGTATAAATGCCTACACAAGGATGCTAGCTAAGAAGTTCCCTAATTTTTGCATAAATTGTATATGCCCGGGCTCTGTCAAGACTGATATAAACCACAACCAAGGCTTGTTAAGCATTGATGAAGGTGTTGAAAATCCTGTTAGGCTAGCATTGTTGCCTCAAGATGGACCTTCTGGCCTCTTTTTCTCAATGGATGAAGTCATTCCGTTTTGA 882 0.3968 MGEAAKRYAVVTGANKGIGYGICKKLALNGIVVVLTARNEKRGLEAVERLKEFGLSDFVVFHQLDVTDPSSVTSLSHFIKTRFGKLDILVNNAGVPGGIVNAENYLRRKRGEIFDWNLIVYQNYELAKECVETDFFGAERVTEALLPLLQLSTSPRIVNISGQIGLLKHIPNEWARGVLSDIENLTNEKLYEVLREFLKDYKEGSLESKNWPAVVSGVTMAKAGINAYTRMLAKKFPNFCINCICPGSVKTDINHNQGLLSIDEGVENPVRLALLPQDGPSGLFFSMDEVIPF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0613 293 Pfam short chain dehydrogenase 8 167 IPR002347 -
Vra9g0613 293 PANTHER OXIDOREDUCTASE-RELATED 1 293 - -
Vra9g0613 293 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 293 - -
Vra9g0613 293 Gene3D - 3 293 - -
Vra9g0613 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vra9g0613 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Vra9g0613 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Vra9g0613 293 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vra9g0613 293 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vra9g0613 293 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Vra9g0613 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Vra9g0613 293 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Vra9g0613 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 278 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0613 Vra-Chr9 6986399 6988235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0613 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 23.016 6.56e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0613 K15095 - gmx:100802560 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0613 9 6986399 6988235 Vra9g0613 9 6986399 6988235 ECH