Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0612 ATGGGAGAAGAAGCAAAAAGGTATGCAGTGGTGACAGGAGCTAACAAGGGAATTGGTTATGGAATATGCAAGAAACTGGCTTTGAATGGAATTGTGGTGGTGCTAACAGCTAGAAATGAGAAAAGGGGTTTGGATGCAATGGAAAGATTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAACTTGATGTCACTGATCCTCCTAGTGTTGCTGCTTTGGCACAGTTCATCAAAACCAGATTTGGAAGACTTGACATCTTGGTGAACAATGCAGGTGTTCCTGGAGGACTAGTAAATGGAGAGAATGTTCTTAGAAAGAAAAGGGGCGAAATATCAGATTGGAATATAATAGTTCCACAAAATTATGAGTTAGCAGAAGAATGTGTTGAAATAAACTTTTTTGGTGCAGAAAGAGTAACAGAAGCTCTTCTTCCACTCCTTCAACGATCTACTTCTCCTAGGATTGTCAATGTCTCCTCTAGAAGAGGTGTATTGAAGAATATACCAAATGATTGGGCAAGAGGAGTGCTGAGTGACATTGATAACCTTACAAACAAAAAGCTTCATGTGGTGTTAAGGGAGTTTCTGAAAGATTACAAAGAAGGATCATTGGAATCGAAGAAGTGGCCAGCTGTTCTTTCTGGCTACACCATGTCCAAAACAGCCTTAAATTCGTATACAAGAATGTTGGCTAAGAAGTTTCCTCGTTTTCGCATAAACTGTTTGTGCCCGGACTTTGTCAAGACTGATCTAAACCAGAATGTAGGGTTTTTAACCATTGATGAAGGTGCTGAGTGCCCCGTCAGACTAGCTCTTTTACCAGATGATGGTCCTTCTGGTCTCTTTTTCTTAAAGAATCAAGTACTTTCTTTTTTCTAA 885 0.3989 MGEEAKRYAVVTGANKGIGYGICKKLALNGIVVVLTARNEKRGLDAMERLKEFGLSDLLVFHQLDVTDPPSVAALAQFIKTRFGRLDILVNNAGVPGGLVNGENVLRKKRGEISDWNIIVPQNYELAEECVEINFFGAERVTEALLPLLQRSTSPRIVNVSSRRGVLKNIPNDWARGVLSDIDNLTNKKLHVVLREFLKDYKEGSLESKKWPAVLSGYTMSKTALNSYTRMLAKKFPRFRINCLCPDFVKTDLNQNVGFLTIDEGAECPVRLALLPDDGPSGLFFLKNQVLSFF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0612 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Vra9g0612 294 Gene3D - 3 293 - -
Vra9g0612 294 PANTHER OXIDOREDUCTASE-RELATED 1 293 - -
Vra9g0612 294 Pfam short chain dehydrogenase 8 167 IPR002347 -
Vra9g0612 294 CDD carb_red_PTCR-like_SDR_c 7 293 IPR045313 GO:0016616
Vra9g0612 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
Vra9g0612 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vra9g0612 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vra9g0612 294 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Vra9g0612 294 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Vra9g0612 294 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Vra9g0612 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 293 - -
Vra9g0612 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vra9g0612 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Vra9g0612 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0612 Vra-Chr9 6980462 6984006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0612 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 22.222 5.15e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0612 K15095 - gmx:100802560 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0612 9 6980462 6984006 Vra9g0612 9 6980462 6984006 ECH