Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0588 ATGCAAGCACTGTATTCATATTGCAGTCTTCAAGTGCCCAGCTTCTCGATTACTGCAACTCCTCCAAAGTTTGCATCTTTTGTGTCCACCTTGAGCCCCTCCAAGGCTGGAACTAGATTGTGTTTGCCTTTTGGTTGTGGGAGTTACAAGCCCATTACAAGGAGTCTGTGGGATGGGTTTGAGGTGCAGTATGCATCCTCCGATGGAGAAAGTGGTGATGGATTTTACATGAGAAGATGTGTGGAGCTTGCAAGGAACGCTATTGGGTATACCAGCCCCAATCCATTGGTGGGATGTGTTATTGTAAAGAATGGGATAGTTGTTGGAGAAGGGTTCCACCCTAAAGCAGGGCGACCGCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCACAAAATGCGACTGCTTATGTGAGCTTGGAACCTTGTAACCATTTTGGTAGGACTCCACCTTGTACTGAAGCTCTAATTAAAGCCAAAGTGAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCCATAGTTGCCTTCAAAGGGGTGGAAAGATTGAGAGATGCAGGAATTGAAGTTGTTGTGGGTGTAGAGGAAGAGTTGTGCAAGAGCCTCAANGAGCCTTACATTCATCGNATGTTGACGGGAAANCCTTTCCTTANTTTGAGATATTCTCTTTCTGTCAATGGAAACTTTTTGAACTTGCTTGGGAATGGAGCTGCAGACTGTGGTGGTTACTATTCAAGGCTATTACAGGAATATGATGCAGTGGTAATGTCTTCTTCCTTTTTCACTGGAAACTTTAAAGTACCTGCATCTAAAGAACCTGGAGCCAACCAACCAATTCGGATTGTAATACATAAAGATCCTAGTTCTTTAAATCAAATTCTATCATCTATCAATGACATCACAAGCAAAATCATAATCTTTACTGAAAATAAAGCCGGAACAGCTCCAGAAGTGGCTCAACAAGGAATTGAAACTGTAGCTCTGGATCAAATAAATCTGGATGTGATCTTGGATTATTGTAATCGTCAAGGATTATGCAGTGTTCTATTAGATATTAGAGGAAGTTTCAGTGAGTTTGAAGTGCTTGTTATGGAGGCTATGGAGAAGAACTATATTAATAAATTTATCACAGAAATTTTGCCTGTTTGGAACAAACGTACTGAGCCAGATCCTCTACAGACATTGAAGGGCTTAGAGCAAGGAATGAAAGTGCTAAATTTGAAGTCGAAGACCTCTGATCAGAGTGTTGTAATTGAGGGATATTTTAAATCTGAGTAA 1284 0.4128 MQALYSYCSLQVPSFSITATPPKFASFVSTLSPSKAGTRLCLPFGCGSYKPITRSLWDGFEVQYASSDGESGDGFYMRRCVELARNAIGYTSPNPLVGCVIVKNGIVVGEGFHPKAGRPHAEVFALRDAGDLAQNATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPIVAFKGVERLRDAGIEVVVGVEEELCKSLXEPYIHRMLTGXPFLXLRYSLSVNGNFLNLLGNGAADCGGYYSRLLQEYDAVVMSSSFFTGNFKVPASKEPGANQPIRIVIHKDPSSLNQILSSINDITSKIIIFTENKAGTAPEVAQQGIETVALDQINLDVILDYCNRQGLCSVLLDIRGSFSEFEVLVMEAMEKNYINKFITEILPVWNKRTEPDPLQTLKGLEQGMKVLNLKSKTSDQSVVIEGYFKSE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0588 427 SUPERFAMILY Dihydrofolate reductase-like 245 423 IPR024072 -
Vra9g0588 427 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 71 261 - -
Vra9g0588 427 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 71 261 - -
Vra9g0588 427 CDD Riboflavin_deaminase-reductase 77 189 - -
Vra9g0588 427 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 120 158 IPR016192 GO:0008270|GO:0016787
Vra9g0588 427 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 75 170 IPR002125 -
Vra9g0588 427 Gene3D Dihydrofolate Reductase, subunit A 211 424 IPR024072 -
Vra9g0588 427 Gene3D Cytidine Deaminase, domain 2 63 210 - -
Vra9g0588 427 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 71 193 IPR002125 -
Vra9g0588 427 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 77 412 IPR004794 GO:0008835|GO:0009231
Vra9g0588 427 SUPERFAMILY Cytidine deaminase-like 73 212 IPR016193 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0588 Vra-Chr9 6644629 6647008 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0588 K11752 - gmx:100786393 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0588 9 6644629 6647008 Vra9g0588 9 6644629 6647008 ECH