Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0580 ATGGAGAACGAGAAAGCGTTTGAGTTTCTCGGACGCGTTCCTCTTCTGCAGAGGCTTCCGAGCTCGTCTGTAAGGAAGATATCTCAACTTGTGGATGTCATAAGCTGCGAGCCGGGAGAGTATGTTGTTCGTGAGGGTGAACATGGAGATGGCGTGTACTTCATATTGGATGGAGAGGCTGAGGTTGTTGGATCCGTTAGTGCCAATGATGAAAATCGCCCCGACTTCCAGTTGAAAAGATATGACTACTTTGGTTATGGTTTGTCAAACACAGTTCACCGGGCAGGTGTTGTTGCTTTGTCTAAGCTGACATGCTTAGTGCTTCCCTATGAGCACTCAACACTGCTGCAGCCAAAATCTATCTGGAGAGCAGAAAATTGCGCTGAGACATGCTCACCTGTGGAGAATATACTGCATGTGGAACCCATGGAGGTAGATATCTTCCGAGGAATTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGACTGTCTAAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGAGATTTAGAAAAACCAATTACATATAAAGTTGATCGTATCCGTGATGGGAGGAGCTTTGCTACAAGGAAAGTAGAAGGAATTCAAAAGGGAATTACCATATTCACGCTGTTGGCTTCATTTCAAAAGGAGGAATCGGGGATGGTCCACCAGAAAGTAGCTATACCATCTGTGCCATCTCCAGATAAGCTTCTACCAATGGAAGAGCTACGGGAGAGACGTCTTACTGACCCTCGTTTACCAGTAACCTACCGGAACAAAGTGGCTACATCTGAATTCATACCCTGGCCCATAGAGATACGGTTATGTGAATATGAATTCTCAACAAATATGACAAAATCTCCCCCCAGTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGCGTGGTGGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGCTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGACCACTCTATGTGGTTTCATCGATCTGTAAAAGCAGATGATTGGGTGCTATTTGCGATCTTTACTCCCACTGCCCACAGTGCACGTGTCTTTGTGACTGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGACTAGCCAGGAAAATTAATCCAGGAAATTCAGCCATTAAATCTAAGTTGTGA 1290 0.4473 MENEKAFEFLGRVPLLQRLPSSSVRKISQLVDVISCEPGEYVVREGEHGDGVYFILDGEAEVVGSVSANDENRPDFQLKRYDYFGYGLSNTVHRAGVVALSKLTCLVLPYEHSTLLQPKSIWRAENCAETCSPVENILHVEPMEVDIFRGITLPDAPRFGKVFGGQMIGQALAAASKSVDCLKVVHSLHAYFILAGDLEKPITYKVDRIRDGRSFATRKVEGIQKGITIFTLLASFQKEESGMVHQKVAIPSVPSPDKLLPMEELRERRLTDPRLPVTYRNKVATSEFIPWPIEIRLCEYEFSTNMTKSPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHREKGFRTRSVSLDHSMWFHRSVKADDWVLFAIFTPTAHSARVFVTGQMFNQKGELLVSLVQEGLARKINPGNSAIKSKL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0580 429 TIGRFAM tesB: acyl-CoA thioesterase II 138 416 IPR003703 GO:0006637|GO:0047617
Vra9g0580 429 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Vra9g0580 429 Gene3D Jelly Rolls 1 126 IPR014710 -
Vra9g0580 429 PANTHER ACYL-COA THIOESTERASE 52 429 IPR003703 GO:0006637|GO:0047617
Vra9g0580 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 417 IPR029069 -
Vra9g0580 429 SUPERFAMILY cAMP-binding domain-like 6 112 IPR018490 -
Vra9g0580 429 SMART cnmp_10 15 132 IPR000595 -
Vra9g0580 429 Gene3D - 128 418 IPR042171 -
Vra9g0580 429 Pfam Thioesterase-like superfamily 161 414 - -
Vra9g0580 429 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Vra9g0580 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 131 242 IPR029069 -
Vra9g0580 429 PANTHER ACYL-COA THIOESTERASE 52 429 - -
Vra9g0580 429 CDD Thioesterase_II_repeat1 313 414 - -
Vra9g0580 429 CDD CAP_ED 15 112 IPR000595 -
Vra9g0580 429 CDD Thioesterase_II_repeat2 146 238 - -
Vra9g0580 429 Pfam Cyclic nucleotide-binding domain 35 111 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0580 Vra-Chr9 6505470 6514834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0580 1 429 Acyl Lipid Metabolism Gene Families AT1G01710 63.170 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0580 K01068 - gmx:100797680 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0580 9 6505470 6514834 Vra9g0580 9 6505470 6514834 ECH