Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0557 ATGCTCTGCAAATTCCATTTAAAAAAGCAGCTTCCTTTCCCTCCAATTGCTTATTCATTTGCCACTCGGTACACCCACTCATGGAGCAAACTCAGAGTTTTTATGCCATTTCCTGATGAAACCAACTTAAGGGATCCTTGCACTGTTCATTTATTTTATGCCAACGCCCTCAAAGTCTCCACCAAATGGGCTCTTTTTCCTGAAGGAAAACAGTTGCATGCACATTTGATAAAGTTTGGATTTTGCCATGTTCTGTCCCTGCAAAATCAGATTTTGAGTCTTTATCTGAAGTGTAAAGAAACTAAAGATGCACAGAAACTGTTTGAAGAATTGCCCGTGAGAAATGTGGTTTCGTGGAACATTCTAATTCGGGGCATTCTTGGATGTGGCAATGCAGTTGAAAATGACTCGAATCCACAGCTCTGTTTTTCTTATTTCAAAAGAATGTTGTTGGAAACGGTGGTTCCGGACAGTACAACTTTGAATGGTCTCATTGGTGTTTGCATAAAGTTTCGTGATATTGACTTGGGTTTCCAGTTGCATTGTTTTGCAGTGAAACTGAGACTTGATTTGGATTGTTTTGTTGGAAGTGTTCTTATTGATTTATATGCTAAATTTGGCTTGGTTAAGAACGCAAGGATGGTTTTTCATGTTGTTCCTCAAAGAGATTTGGTTATGTGGAATGTGATGATTTCATGCTACGCCTTGAATCGTTCACCGGAAGAGGCTCTGGGAATGTTCAACTTGATGCGATCAGATTGTGGAAATGGAGATGAGTTCACTTTTAGCATTGTGCTTAGTGTGTGTGATACTCTGGACTATTATGATTTTGGAAGGCAGCTTCATGGGCACATTCTGAAACAATCATTCGATTCAGATGTGTCAGTAGCTACTGCATTGATTAACATGTATGCGAAAAATGAAAATATAACTGACGCACACAAAACATTTGATAGGATGGTGATTAGAAATGTTGTGGCTTGGAACACCATTATCGTTGGGTGCGGGAATTGTGGAGAAGGGAATGAGGTTATGAAGCTTCTGAAAGAGATGCTTCACGAAGGGGTTTCCCCTGATGAACTAACTATTTCCAGCACTATTAGTTCATGTGGCTATACTTGTGCCATTACTGAAACAATGCTAGTCCATGCTTTTGCAGTTAAATCCTCATTTCAAGAATTTGTATCTGTTGTTAATTCTCTGATCAGTGCTTACTCCAAGTGTGGTAGCATAGCTAATGCAAGCCAATGCTTCAGATTAGCTGCAGAACCTGATCTTGTTACGTGGAGTTCATTGATAAGTGCATATGCATTCCATGGTCTAGCCAAGGAAGCAACTGAAACATTTGAGAAGATGCTATCTTGTGGAGTAATTCCGGATCAGATTTCTTTTCTTGGTGTTCTCTGTGCTTGTTCTCATTCTGGGCTTGTGGCTAAGGGGCTTCACTACTTTAACTTGATGACCAGTGTGTATCAGATTGTTCCTGAATCAGGGCATTATACCTGCCTTGTTGATCTTCTTGGAAGATATGGTCTTATAAATGAAGCTTTTGAATTCTTAAGGTCACTGCCAATGGAAGCTGAATCGAATACATTGGGAGCATTTATAGGATCCTGCAATATCCATGCAAATATAGAACTGGCTAAATGGGCTGCAGAAAGGCTCTTCATCATAGAACCAGAGGAGAGTGTAAACTATGCAGTCATGTCTAACATTTATGCTTCCCATAGACATTGGTGTGATGTAGAAAGAGTTCGTGGAATGATGGGGAAGAAGGGTGATGCAAGAGTCCCTGGTTGCAGCTGGATTGAAAATGGTAATCGAGTTCATTCGTTTGTATCCAATGATAAGACACACCCTCTCAGTTATATTTATGGCGTTCATGCAAATTAA 1893 0.3999 MLCKFHLKKQLPFPPIAYSFATRYTHSWSKLRVFMPFPDETNLRDPCTVHLFYANALKVSTKWALFPEGKQLHAHLIKFGFCHVLSLQNQILSLYLKCKETKDAQKLFEELPVRNVVSWNILIRGILGCGNAVENDSNPQLCFSYFKRMLLETVVPDSTTLNGLIGVCIKFRDIDLGFQLHCFAVKLRLDLDCFVGSVLIDLYAKFGLVKNARMVFHVVPQRDLVMWNVMISCYALNRSPEEALGMFNLMRSDCGNGDEFTFSIVLSVCDTLDYYDFGRQLHGHILKQSFDSDVSVATALINMYAKNENITDAHKTFDRMVIRNVVAWNTIIVGCGNCGEGNEVMKLLKEMLHEGVSPDELTISSTISSCGYTCAITETMLVHAFAVKSSFQEFVSVVNSLISAYSKCGSIANASQCFRLAAEPDLVTWSSLISAYAFHGLAKEATETFEKMLSCGVIPDQISFLGVLCACSHSGLVAKGLHYFNLMTSVYQIVPESGHYTCLVDLLGRYGLINEAFEFLRSLPMEAESNTLGAFIGSCNIHANIELAKWAAERLFIIEPEESVNYAVMSNIYASHRHWCDVERVRGMMGKKGDARVPGCSWIENGNRVHSFVSNDKTHPLSYIYGVHAN* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0557 630 PANTHER OS07G0578800 PROTEIN-RELATED 36 622 IPR045215 GO:0003723|GO:0009451
Vra9g0557 630 PANTHER OS07G0259400 PROTEIN 36 622 - -
Vra9g0557 630 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Vra9g0557 630 TIGRFAM PPR: pentatricopeptide repeat domain 298 326 IPR002885 -
Vra9g0557 630 TIGRFAM PPR: pentatricopeptide repeat domain 225 253 IPR002885 -
Vra9g0557 630 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Vra9g0557 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Vra9g0557 630 Gene3D Tetratricopeptide repeat domain 274 374 IPR011990 GO:0005515
Vra9g0557 630 Gene3D Tetratricopeptide repeat domain 173 273 IPR011990 GO:0005515
Vra9g0557 630 Pfam PPR repeat 427 457 IPR002885 -
Vra9g0557 630 Pfam PPR repeat 225 253 IPR002885 -
Vra9g0557 630 Pfam PPR repeat 499 522 IPR002885 -
Vra9g0557 630 Pfam PPR repeat 398 419 IPR002885 -
Vra9g0557 630 Gene3D Tetratricopeptide repeat domain 49 172 IPR011990 GO:0005515
Vra9g0557 630 Gene3D Tetratricopeptide repeat domain 382 621 IPR011990 GO:0005515
Vra9g0557 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vra9g0557 630 Pfam PPR repeat family 323 370 IPR002885 -
Vra9g0557 630 Pfam E motif 542 604 IPR046848 -
Vra9g0557 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 253 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0557 Vra-Chr9 6138143 6140702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0557 91 620 Glycoside Hydrolase AT3G49170 32.156 2.14e-96 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0557 - - ccaj:109802654 1036.94