Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0538 ATGGGTAGTAAAACTCTGCTCAAGTGGCCCAAGCAAATCACAAATTCCCTAGTTGTGCAGTTAATTAAAGCAGAAAAGGATGTGCACAAAGCAGTTGCTATATTCGATTCTGCAACTGCTGAATATAGTAATGGGTTTCGTCATGATCATGAAACTTTTAGTCTCATAATCTCCAGGTTAGTAGCAGTGAATCAGTTTAGAACAGCAGAAGGGATGCTGGAGAGAATGAAGCAAGAAGATTGTAAGGTTACAGAGGACATACTTTTAACTATATCCAGGGGTTTTGGACGTGTTCATAGGCCACTTGATGCTGTCAGAGTTTTCCACAAGATGGAAGATTTTCAGCTTAGACCCACTCAAAAGGCTTACCTTACAATAGTAGATATTCTTGTGGAGGAAAACCATGTAAAAAGGGCTATTCGTTTTTATAGGGAGATGAGAGAACTGGGCTTTCCACCTACTGTTGTTTCCCTCAATATTTTGATCAAGGCCCTCTGCAAAAACAAGGAGAGTGTTGATTCTGCCTTACTGATATTTCAGGAAATGTCCAACCATGGGTGCCAACCTGATTCATATACATATGGTACATTGATTAATGGGATGTGTAGACTTGGAAATATCAGTGAGGCAAAGGAACTATTCAAAGAGATGAAGCAAAAAGGTTTTTCAGCTTCTGTTGTTACTTATACTAGTTTGATACATGGCTTGTGTCAGTCTAATAATTTAGATGAAGCTATTGAATTGCTTGAAGAAATGAAAAGAAATGACATTGAGCCAAATGTTTTTACTTATAGTTCTCTTATAGATGGTTTGTGCAAAGGGGGTCATTCATCGCAAGCAATGGGATTATTGGAAGTGATGGTCAGAAAGAACCATTTACCCAACATGGTTACTTATAGTTCTTTAATCAGTGGACTGTGTAAAGAAGGAAAGCTTTGTGAATCTGTGGAGATTCTTGATAGGATGAGGATTCAAGGCTTGAAACCAAGTGCAGGGTTGTATGGAAAAGTCATAAGTGGCCTCTGTGCTGCAGGCAGCTTTCAAGAAGCTGCAAACTTCATTGATGAGATGGTGCTAGGTGGTATTTCGCCAAATCGAGCAAGTTGGAGCCTTCATGTTAGGATGCATAACATGGTAGTCCAGGGTCTTTGTAATAATGTTGATCCACCTCGTGCATTTCAGTTGTATCTTAGTTTGCGAACTAGAGGCATCTCTGTTGAAGTTGGCACTTTTGATTGTCTAGTCAAATGTTTTTGTAAGAGAGGAGACCTCCATAAAGCTGCTCGGATTCTTGATGAGATGGTGTTAGATGGATGCATTCCAGACGAACAAATATGGAATGTTGTAATTGGTGGACTTTGGGACCGAAAAAAAGTCAGAGAAGCCACTGAGCTGTTGCTGGCTGAGCTGAGGCAGAAGTTTGTTGAAGCTGAAAGTTGA 1440 0.4 MGSKTLLKWPKQITNSLVVQLIKAEKDVHKAVAIFDSATAEYSNGFRHDHETFSLIISRLVAVNQFRTAEGMLERMKQEDCKVTEDILLTISRGFGRVHRPLDAVRVFHKMEDFQLRPTQKAYLTIVDILVEENHVKRAIRFYREMRELGFPPTVVSLNILIKALCKNKESVDSALLIFQEMSNHGCQPDSYTYGTLINGMCRLGNISEAKELFKEMKQKGFSASVVTYTSLIHGLCQSNNLDEAIELLEEMKRNDIEPNVFTYSSLIDGLCKGGHSSQAMGLLEVMVRKNHLPNMVTYSSLISGLCKEGKLCESVEILDRMRIQGLKPSAGLYGKVISGLCAAGSFQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSLRTRGISVEVGTFDCLVKCFCKRGDLHKAARILDEMVLDGCIPDEQIWNVVIGGLWDRKKVREATELLLAELRQKFVEAES* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vra9g0538 479 PANTHER EMP16 3 473 - -
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vra9g0538 479 SUPERFAMILY HCP-like 121 259 - -
Vra9g0538 479 Pfam PPR repeat 52 81 IPR002885 -
Vra9g0538 479 Pfam PPR repeat 334 361 IPR002885 -
Vra9g0538 479 Pfam PPR repeat 123 151 IPR002885 -
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 189 IPR002885 -
Vra9g0538 479 Pfam PPR repeat family 225 273 IPR002885 -
Vra9g0538 479 Pfam PPR repeat family 153 203 IPR002885 -
Vra9g0538 479 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 3 473 - -
Vra9g0538 479 Coils Coil 460 479 - -
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Vra9g0538 479 Pfam PPR repeat 402 435 IPR002885 -
Vra9g0538 479 Pfam PPR repeat 290 323 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 192 225 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 334 365 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 52 84 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 122 154 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 156 191 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Vra9g0538 479 TIGRFAM PPR: pentatricopeptide repeat domain 227 261 IPR002885 -
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vra9g0538 479 Gene3D Tetratricopeptide repeat domain 3 113 IPR011990 GO:0005515
Vra9g0538 479 Gene3D Tetratricopeptide repeat domain 114 170 IPR011990 GO:0005515
Vra9g0538 479 Gene3D Tetratricopeptide repeat domain 374 478 IPR011990 GO:0005515
Vra9g0538 479 Gene3D Tetratricopeptide repeat domain 171 275 IPR011990 GO:0005515
Vra9g0538 479 Gene3D Tetratricopeptide repeat domain 276 373 IPR011990 GO:0005515
Vra9g0538 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0538 45 466 Glycosyltransferase AT1G05670 29.621 5.90e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0538 - - gmx:100794116 857.825