Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0527 ATGGACTCGGGGAGAATGAGCCAACACCTTCTATCCAAAATTGCCACCAATGACAAACATGGAGAGAATTCTCCATACTTTGATGGCTGGAAAGCATATGAGAGAAACCCTTTTCACCCTACAAAAAATCCTCAAGGTGTTATTCAGATGGGTCTTGCAGAAAATCAACTATGCTTTGATCTGATTGAAGACTGGATTCTGAATAATCCCGAAGCTTCCATTTGCACTCCTGAGGGAGTGCATCAGTTCAGAAACATTGCCAACTTTCAAGACTATCATGGACTGCAACAGTTCAGAAATGCTATTGCAAACTGGATGTCAAAAGTGAGAGGAGGTAGGGTCAGATTTGATCCAGACCGTATATTGATGAGTGGAGGAGCAACAGGAGCCAACGAGCAAATCATGTTCTGCTTGGCTGATCCTGGAGATGCCTTTATGATTCCTACCCCATTTTATCCAGGATTCGTTCGTGACTTGTGTTGGAGAACCCAGGTGCAGTTGATTCCTGTCCATTGCCATAGCTCCAACGACTTCAAGATTACAAGAGAAGCTCTTGAAGAAGCTTACAAAAAAGCCAAAGAGGAGAACGTCAACGTTAAGGGGTTGATCATAACAAACCCCTCTAACCCTTTGGGCACAACCTTGGACAGGGACACGTTGAAGAGCCTAGTGAGCTTCATCAACGAGAAAAACATTCACTTAGTCTGTGATGAAATCTACGCAGCAACAGTGTTCAGTAGTTCCCCCAGTTATGTAAGCGTGGCTGAAGTGATCCAAGAAATGGAACATTGCAAACGTGAACTGATTCATGTCATTTATAGTTTGTCGAAAGACATGGGGTTCCCTGGTTTCAGAGTTGGCATAGTTTATTCATTCAACGATGAAGTTGTGGCATGTGCTAGGAAAATGTCTAGCTTCGGCTTAGTCTCCTCGCAAACTCAACACATGCTGGCTTCCATGCTTTCCGATGAAAAGTTTGTGACGAAGTTTCTTTCGGAGAATTCAAGAAGGTTGGAGGAAAGGCACGAGAAGTTCGTGAAGGGGCTCGAAGAGGTTAACATTGTTCGGTTTCCAAGCAGTGCAGGACTTTTCTTCTGGATGAACTTGAAGAATTTATTGGAGGAAGCAACGTTCGAAGCTGAGCTGAAGCTATGGCGTGTGATCATTCACGAGGTGAAGCTGAATGTGTCACCAGGGTCTTCTTTCAACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGATGATCAAACAGTGGATATTGCACTCAACAGGATTCGTGAACTGGTCGGGAAAGAAACAAAGAAACCAGTGGGAATGAAACGTTGGCAATCGAATCTTAGACTCAGTTTTTCTTCGAGGCGGTTTGATGACAGTGCTATGTCTCCTCATTCACCTATTACATCACCTCTTGTTCAAGCCACTTGA 1437 0.4412 MDSGRMSQHLLSKIATNDKHGENSPYFDGWKAYERNPFHPTKNPQGVIQMGLAENQLCFDLIEDWILNNPEASICTPEGVHQFRNIANFQDYHGLQQFRNAIANWMSKVRGGRVRFDPDRILMSGGATGANEQIMFCLADPGDAFMIPTPFYPGFVRDLCWRTQVQLIPVHCHSSNDFKITREALEEAYKKAKEENVNVKGLIITNPSNPLGTTLDRDTLKSLVSFINEKNIHLVCDEIYAATVFSSSPSYVSVAEVIQEMEHCKRELIHVIYSLSKDMGFPGFRVGIVYSFNDEVVACARKMSSFGLVSSQTQHMLASMLSDEKFVTKFLSENSRRLEERHEKFVKGLEEVNIVRFPSSAGLFFWMNLKNLLEEATFEAELKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDQTVDIALNRIRELVGKETKKPVGMKRWQSNLRLSFSSRRFDDSAMSPHSPITSPLVQAT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0527 478 Coils Coil 175 202 - -
Vra9g0527 478 MobiDBLite consensus disorder prediction 459 478 - -
Vra9g0527 478 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 449 - -
Vra9g0527 478 SUPERFAMILY PLP-dependent transferases 16 434 IPR015424 -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Vra9g0527 478 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Vra9g0527 478 Pfam Aminotransferase class I and II 48 429 IPR004839 GO:0009058|GO:0030170
Vra9g0527 478 CDD AAT_like 88 431 - -
Vra9g0527 478 Gene3D Aspartate Aminotransferase, domain 1 36 428 IPR015422 GO:0003824
Vra9g0527 478 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 7 449 - -
Vra9g0527 478 Gene3D - 70 323 IPR015421 GO:0003824
Vra9g0527 478 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0527 Vra-Chr9 5712389 5716183 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0527 K20772 - gmx:100813347 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0527 9 5712389 5716183 Vra9g0527 9 5712389 5716183 ECH
Vra4g0814 4 15046160 15049437 Vra9g0527 9 5712389 5716183 PCT