Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0344 ATGTCTTGGGCAGGCCCTGAGGATATTTACCTTTCCACTTCACTTGCTAGCTATCTTGACAGTGAGGCTGATTTTGTATTGTGTACTAATTTGTATGGTCTGACAATAATTGTTGTTGTAGAGAAACTTCTTGTATTACTGAGAGATGGCAGAAAGCTCATGGGGATACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTGGGTCTCTATGTAATCCGTGGAGAAAATGTTGTTCTAATCGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAGGCCTCAGATCTGAAAGGGACAATGAGGAAAAGAATGGAATTCCTTGACTTTGACTAG 447 0.4295 MSWAGPEDIYLSTSLASYLDSEADFVLCTNLYGLTIIVVVEKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0344 148 PANTHER LSM1 41 147 IPR044642 -
Vra9g0344 148 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 41 147 - -
Vra9g0344 148 CDD LSm1 48 102 IPR034104 GO:0000956
Vra9g0344 148 SMART Sm3 34 101 IPR001163 -
Vra9g0344 148 Gene3D - 38 145 - -
Vra9g0344 148 Pfam LSM domain 41 100 IPR001163 -
Vra9g0344 148 SUPERFAMILY Sm-like ribonucleoproteins 42 103 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0344 Vra-Chr9 2868352 2871084 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0344 K12620 - gmx:100306352 238.039