Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0341 ATGAGAACCCCTTTTGTCGGATTCAGCAGTATACTTGTGCTTCTTGTTTTCGTCTCTGCTTCCTGTTCTTCTACCCATGGAAGTATGGAAATGGAGAGAACTTTGGCGATTATAAAACCAGACGGATTAATTGGTAACTACACTGATGATATCAAGAGAACAATTGTAGAATATGGTTTCAGCATTTTTAAGGAAAAGATTGTTCAACTTGATCAAGCCACTGTAGAAAAGTTTTATGCTGAGCACTCTTCAAAATGTTTCTTTTCCAGATTAATAAAATACATGACAAGTGGACCAGTGTTGGTTATGGTCTTGGAGAAGGATAATGCTATTGCTGATTGGCGTGCTTTAATGGGCCCTACTGATGCAAGCAAGGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATGCGGATTGGATATAGAAAGGAATTGTGTTCATGGTTCAGACTCTCCTAACTCTGCTCAAAGAGAGATTCCATTTTTCTTTCAGGAGCTGTCCGCAGATGTGGTTGGAGAGCATGATGAACTGTAG 537 0.3985 MRTPFVGFSSILVLLVFVSASCSSTHGSMEMERTLAIIKPDGLIGNYTDDIKRTIVEYGFSIFKEKIVQLDQATVEKFYAEHSSKCFFSRLIKYMTSGPVLVMVLEKDNAIADWRALMGPTDASKAKITHPHSIRAKCGLDIERNCVHGSDSPNSAQREIPFFFQELSADVVGEHDEL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0341 178 Pfam Nucleoside diphosphate kinase 32 166 IPR034907 -
Vra9g0341 178 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Vra9g0341 178 Gene3D - 25 175 IPR036850 -
Vra9g0341 178 PRINTS Nucleoside diphosphate kinase signature 34 56 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra9g0341 178 PRINTS Nucleoside diphosphate kinase signature 78 97 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra9g0341 178 PRINTS Nucleoside diphosphate kinase signature 98 115 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra9g0341 178 PRINTS Nucleoside diphosphate kinase signature 145 164 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Vra9g0341 178 SUPERFAMILY Nucleoside diphosphate kinase, NDK 29 167 IPR036850 -
Vra9g0341 178 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 21 176 - -
Vra9g0341 178 SMART ndk_5 31 171 IPR034907 -
Vra9g0341 178 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 21 176 - -
Vra9g0341 178 ProSitePatterns Nucleoside diphosphate kinases active site. 145 153 IPR023005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0341 Vra-Chr9 2842989 2846001 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0341 K20790 - gmx:100500470 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0341 9 2842989 2846001 Vra9g0341 9 2842989 2846001 ECH