Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0329 ATGGCGGTTTCAACTATAGCCTTGTACGCGAGTCCGCCCAGCAGCGTGTGTTCCACGCCTCACCCTTGCCAGATCAACGCTCACGCTTCCTACGACTTCGAATTGGGGTCCCGATCTTCGTCGCCGGCGGCTTCGACGGCTCCTCCGTCGACGGTGCAGAAGCCTGTGATGGGCGGACTTTCGTGCCTGTTCTCGTCTCCGGCGGCGGCGGTGAAACACGCGGCGTTGTCGTCGAACTTTAACGGTGAGGAGGACGATTTGAAGGAGTTGGGCAGTTCCTTCTCGTATTCTCCGAGCAAGTTTGGTGGGTCTTCGTGGAAGAGGGATCAGAGTCCCGTGTCTGTTTTTCATGGTCCTGTTTCGTGTAGTGGTAGCAGCAGAAGCCCCATTAGTTCTACCTCCGTGAGAAGTATCAGGGGTGGGACCAGTGGGTTGTTTCATGGGTTTGTGAGGAATGCGTTGGGGTCTTGTTTGGATTATGACTTAGATGCGGGTGATTCATCTGCCGCGCTTGTGGATGAGTTGACCTTCAATTTAGAGGATAATTTGGTGGAGGGTGGGTTTCATTTTGAGCCCTATGCTAGAAAGTTGCTGCTGGGGGCGCAGTTGAGGCACAAGATCTTCTGCGAGGAGTTTGTCATCAAGGCCTTTTGTGAAGCTGAGAAGGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACCGCTGTGTTGCTGGCTTTGATTGGTGCCAATTCCACCGTTGTGGCTGCGGGGCTCTTGCATGACACGCTGGATGATGCTTTTCTGACTTACGATTATATATGTGGAGCATTTGGCGCTGGAGTTGCTGATTTAGTTGAAGGGGTATCTAAACTGAGCCACTTAAGCAAACTGGCTCGAGAAAATAATACAGCTTGCAAGTCAGTTGAAGCGGACCGCTTGCACACTATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAACTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCTGTGACCAAGCGGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCATTGGCCAATCGCTTAGGAATCTCTAGCTGGAAAGAACAATTGGAGAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCACGAGGAGCTTTCTTCAAAGCTTGTGGAGTCGTACGATGATGCAATGATTACTTGTGCGATAGAGAGATTAGAGCAAGCCCTTAAAGATGAAGGCATATCTTATAATGTCATTTCTGGGCGGCACAAGAGCTTGTATAGCGTTTACTGCAAAATGTTGAAGAAGAAACTTACCATTGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGACAAAGAAGAAGACTGTTATAAAGCCTTGACAACCGTCCATCGGTTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATACCAATCTCTGCATACTGTGGTGATGGCTGAAGGCAACGTTCCCCTGGAAGTGCAAATTCGAACAAAAGACATGCACTTGCAAGCAGAATTTGGATTTGCAGCTCACTGGAGATACAAGGAAGATGATTGCCAACATTCTTCATTTGTGCTTCAGATGGTGGAGTGGGCTCGGTGGGTTGTTACCTGGCAGTGCGAAGCAATGAGTGGAGACTGTTCATCTGTTAGATATGCTGATTCAGTGAAGCCTCCATGCAAGTTCCCTTCCCATGCTGCCGATTGCCCATATTCCTATAGGCCAGATTGTGGTCAGAACGGGCCCGTTTTCGTCATCATGATCGAGAATGACAAGATGTCTGTTCAAGAATTCAGTGCAAACTCAACGATATTGGACTTGTTGGAGAGAGCTGGGCGTGCAAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAATCACAAACCAGTGAGTGATCCGAAAAGCAAGTTGAAGATGGGAGATGTTATTGAACTTACACCAGCCATACCTGACAAGTATCTTACAGAATACAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTATCAACCATGGGAACTTCTTCTTCAAGTACCATGGTTGGCTCAAGAAGTTGA 2151 0.4826 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPAASTAPPSTVQKPVMGGLSCLFSSPAAAVKHAALSSNFNGEEDDLKELGSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSGSSRSPISSTSVRSIRGGTSGLFHGFVRNALGSCLDYDLDAGDSSAALVDELTFNLEDNLVEGGFHFEPYARKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYICGAFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVTKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITCAIERLEQALKDEGISYNVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTTVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMAEGNVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSGDCSSVRYADSVKPPCKFPSHAADCPYSYRPDCGQNGPVFVIMIENDKMSVQEFSANSTILDLLERAGRASSRLTTYRFPLKEELRPRLNHKPVSDPKSKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSTMGTSSSSTMVGSRS* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0329 716 SUPERFAMILY HD-domain/PDEase-like 196 386 - -
Vra9g0329 716 Gene3D Hypothetical protein af1432 204 386 - -
Vra9g0329 716 ProSiteProfiles S4 RNA-binding domain profile. 653 690 - -
Vra9g0329 716 PANTHER - 1 716 - -
Vra9g0329 716 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 716 - -
Vra9g0329 716 SMART hd_13 231 348 IPR003607 -
Vra9g0329 716 CDD HDc 233 361 IPR003607 -
Vra9g0329 716 SUPERFAMILY Nucleotidyltransferase 376 565 IPR043519 -
Vra9g0329 716 Gene3D Beta Polymerase, domain 2 390 519 IPR043519 -
Vra9g0329 716 ProSiteProfiles HD domain profile. 235 339 IPR006674 -
Vra9g0329 716 Pfam HD domain 220 370 - -
Vra9g0329 716 CDD NT_Rel-Spo_like 408 527 IPR007685 GO:0015969
Vra9g0329 716 Pfam Region found in RelA / SpoT proteins 429 538 IPR007685 GO:0015969
Vra9g0329 716 SMART RelA_SpoT_2 429 539 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0329 Vra-Chr9 2691161 2695130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0329 230 536 EF-hand Containing Proteins AT3G17470 31.003 5.05e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0329 K00951 - gmx:100787301 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0329 9 2691161 2695130 Vra9g0329 9 2691161 2695130 ECH