Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0324 ATGAATTCACCAAAAGAGATGATGAACACTATTCTCATTCTCTTACTTTGTGCTCTCTTTTCATCCACTTCCCATGCTGTTCCGCAAAATTTCTGCAAGGCTGACCTCAAACTTCCACAGACCCCTACTGGTTATCCCTGCCTGCCCTCTGAGAGCGTAACAGCTGGCGACTTTAAGTCCAGCTTTAATGGAAAACCTGGCATTCCAGTCCTAAACAACGCTACACTATACTCTGCAGCTGTTGAGGATTTTCCTATTATCAACGGTGGTCGCATTTCTGGAGGACTTGTAGAGATCGCGCCAGGTGGATCTCTTCCCCTGCATACACATGGTGCCAATGAAATACTAATAGTGATGGAAGGTATAATTAAGGTTGGACTCTTGGAACCTAGGAGAGCTTATCAGAATACACTCAGAGCCAGAGATTTTACGTATTTTCCAGAAGGACAGCCGCATTATCTTATCAATTCTGGTCCTGGGATAGCCGTTGCTTTTGCCGCTTATAGTAGGGATAACCCTCCTTTCAATTTTGTTCATCTAGCGCTTTTCTCCAACGACGTCCCTAGCCGCATCCTAGCCCGAGTTAGCTTCCTTGATGAACCCCAAATCAGGAAGAACAAGGCTCGTTTCAACGGCACCGGCTAG 645 0.4605 MNSPKEMMNTILILLLCALFSSTSHAVPQNFCKADLKLPQTPTGYPCLPSESVTAGDFKSSFNGKPGIPVLNNATLYSAAVEDFPIINGGRISGGLVEIAPGGSLPLHTHGANEILIVMEGIIKVGLLEPRRAYQNTLRARDFTYFPEGQPHYLINSGPGIAVAFAAYSRDNPPFNFVHLALFSNDVPSRILARVSFLDEPQIRKNKARFNGTG* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0324 214 PANTHER GERMIN-LIKE PROTEIN 8-13 12 210 - -
Vra9g0324 214 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Vra9g0324 214 PRINTS Germin signature 136 156 IPR001929 GO:0030145
Vra9g0324 214 PRINTS Germin signature 169 184 IPR001929 GO:0030145
Vra9g0324 214 SMART Cupin_1_3 60 204 IPR006045 -
Vra9g0324 214 Gene3D Jelly Rolls 25 214 IPR014710 -
Vra9g0324 214 SUPERFAMILY RmlC-like cupins 28 205 IPR011051 -
Vra9g0324 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 210 - -
Vra9g0324 214 Pfam Cupin 74 202 IPR006045 -
Vra9g0324 214 CDD cupin_OxOx 29 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0324 Vra-Chr9 2654109 2654753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0324 7 213 Miscellaneous Gene Families AT5G20630 36.916 8.08e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0324 - - vra:106773097 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0324 9 2654109 2654753 Vra9g0324 9 2654109 2654753 ECH