Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra9g0322 | ATGAAGATGATTTACACTCTTTTTCTTTTCGCTCTTCTCTCATCAGCTTGCTGCCATGCTTTTGTCAATGATTTCTGCGTAGCAAACCTAAAGGGTCCTGATGGCCCTTCAGGCTACGAGTGCAAGCCACCCAACACAGTGACAGTGGATGACTTTGTGTTCTCTGGTTTTGTAGCAGGAAACACCTCAGGGGGAGCTGCAGTAACCCCTGCATTTGTGACTGAACTTCCAGGTGTGAACGGTCTTGGTATATCTGCAGCACGGTTAGACATAGCCAAAGGTGGATTTGTTCCAGTGCACTCACATACTGCTTCGAGTGAAATACTGATAATGGTGAAGGGTGAAATCACTGCAGGGTTCATAACACCTTCTGCAGCTTATCAGAAGACACTGAAACCAGGTGATGTTATGGTTTTCCCACAAGGACTCTTGCATTTCCAAGTGAATTCTGGTAAGGGAAAAGCCACTGCTTTTCTTGCTTTCAGTAATCCAAGCCCAGGAGTACAACTACTTGACCTTCTTTTATTCGGCAACAACTTGCCTTCTCAGTTGATTTCACAAACTACTTTGCTTGATTATGCGCAAGTGAAGAAGCTTAAGGCTATTTTTGGTGGCAGAGGATAG | 624 | 0.4471 | MKMIYTLFLFALLSSACCHAFVNDFCVANLKGPDGPSGYECKPPNTVTVDDFVFSGFVAGNTSGGAAVTPAFVTELPGVNGLGISAARLDIAKGGFVPVHSHTASSEILIMVKGEITAGFITPSAAYQKTLKPGDVMVFPQGLLHFQVNSGKGKATAFLAFSNPSPGVQLLDLLLFGNNLPSQLISQTTLLDYAQVKKLKAIFGGRG* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra9g0322 | 207 | SUPERFAMILY | RmlC-like cupins | 24 | 200 | IPR011051 | - | |
| Vra9g0322 | 207 | CDD | cupin_OxOx | 19 | 203 | - | - | |
| Vra9g0322 | 207 | PANTHER | GERMIN-LIKE PROTEIN | 8 | 203 | - | - | |
| Vra9g0322 | 207 | Gene3D | Jelly Rolls | 20 | 206 | IPR014710 | - | |
| Vra9g0322 | 207 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | - | - | |
| Vra9g0322 | 207 | SMART | Cupin_1_3 | 55 | 197 | IPR006045 | - | |
| Vra9g0322 | 207 | PANTHER | GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 | 8 | 203 | - | - | |
| Vra9g0322 | 207 | PRINTS | Germin signature | 100 | 120 | IPR001929 | GO:0030145 | |
| Vra9g0322 | 207 | PRINTS | Germin signature | 129 | 149 | IPR001929 | GO:0030145 | |
| Vra9g0322 | 207 | PRINTS | Germin signature | 162 | 177 | IPR001929 | GO:0030145 | |
| Vra9g0322 | 207 | Pfam | Cupin | 62 | 196 | IPR006045 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra9g0322 | Vra-Chr9 | 2608917 | 2609884 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra9g0322 | 1 | 205 | Miscellaneous Gene Families | AT5G20630 | 55.981 | 3.32e-75 | 224 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra9g0322 | - | - | gmx:100813853 | 328.561 |