Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0315 ATGGAAGTGATCGAAAAGAAACCAAACAGCGCCGCAGAAAGTGAGATACGCGAAGAATGTAAGGTTGGAGTGAGAAGCGTAACCATGGCGCTTACTTTCAGAACCCTCTTTCTCATGCTACTCGCAATCCTCTCTCTTCTCCTTTTCGAGGACTGGGTGTCAACGCCTTCTTGCAACAACACCGACAACATCATCGACGACAACCTTAAAGTCATGATGGTCGCTGACCTCCTTCTCTCCGATTCCGGTTTCGTCAACCGCTTTTTCCGAGACTACTACATGTCCAAATTCTTTCGGAAATCGTTCGAGGTGCTGCGGCCCGATTTGCTTCTGGTGTTGGGCGACGTTTCGGCGCGAGGCTCGGAGCTAACGAGGAGCAAGTGGGTGTCGGTGCTGCGGAGGTTTTACAGAGTGTTGGGCCCTTTTGTTGGGCTTCCGTTCCACGCTGTTCTCGGCGACAGAGACGTCGGAGAGTGTGGGGACGTTGATGTTGATAGGGTTAGTTGGATTGCGAGCAAGTTTCCTGGGTTGGATTCTTCTGGCTGCGCTGCGTTTGAGATTGGGAATGTGAGTTTTGTCACGCTGAACGCGGTGGCTCTGCTTTGCGGGGGGAGTGGTGGGTTGCGTTTTGATGTGGAGAAGGTGATAGAAAGGGAGAGTGTGGAGGTTCACATGGGAATGGAGAGGGTGGTGAAGAGAGTCAATGGTTTTGGGGAGTTTGCAGATGCGGATGTTTTATCTGGGTCAGGGCCTGTCGTTTTGCTTCACCTGCCGTTGGATCAAACAAGGAATGAACACTTTGGTTCGGTTGGTGATTTTGAGAAATATTGGACTTCTTCCATGGAGGGGTTAAATGTGGTGCCAGAAAGCAGGGGTGGCCAGTACAAGTTGCTTCATATGCTGCCTCCGAATGCTTCTGAGTACATTTTACAAGCTCTGAAACCAAGGATTATTTTCAGTGCTCACAGGTATACATTTTCTGATCACGTTCATGGGGACAGAACTCGTGAGATTAGTGTTCCAGCAATGTCATGGAACGCAAGAGATGACCCTGGATTCGTGATTGCCTCTTTCCAAAAGGCAGGAAGAGCAGTGAGCATAAGCCATTGTTCTCTTGCTAGGGAATCTCAAATTGTTCTAGTCTACATTTCTGTAATGTTTTTGTTCTGTTTGGTGTGTTTAAAAGGATATTCTGAGTCTGCTACTGGTATTCATGCTGATTCTATTAACAGCAAGGAAAAAAGTATAATTGATGGACCTTGCTACCAGTTGGAGGACAACAGATTGTGTTGTTCGAAAGCAAGGTTCTTGACGCAGATCGATTCTCCGGCCTTCCGCCTTCCTTCAATTCAACTCAGCTCTCTGCGCCTTCCCCTGCGCGCCCATGGCCGCATCATAGCACCGATTGATCAATCGATCACATCAAAATCAATGGCGGAAAGCGCATCACCGTCGTCCAAACCCTCACCAATGGACCCTCAGAACCCCGCACCATCCTCCAACCCTACAATCCCTTCCCCTTCCCACAACAACATGCCTTCACCTTCGCTCCCTCCGCTTCCCCAAGACCAGCAACAGCAACAGCAGCAGCAGCAGCAAAATCTTCATCAACAGTTGAGTCCGCCTCAACAACAACAGCCTCTCGTGTCGTCGCAAGCCATGAACACCATCAACGGCATCAACCCTATCTCCAATTTCCAACTCCAGCAGACCTTGCAGCGATCGCCTTCCATGTCGCGCCTCAATCAAATCCAGCCTCAGCAGCAGGCGCAGCAGCAGCAGCAGTTCGGCGTCATGCGCCAACAGGCCGGATTGTACGGCGGACAGATGAGCTTTGCTGCCGCGGGCGGCGGAGCGGGCCAGCAGCAGCAGTTGGGCGGCTCCAATTTGTCGCGGTCCGCGCTGATAGGGCAGAGCGGACACTTCCCCATGTTGTCTGGTGCTGGCTCGCAGTTTAACTTGCTCTCCTCGCCAAGGCAAAAAGGTGGGCTAGTTCAGCAGTCTCAGTTCTCAGGTAATTCTGCTGGACAGTCTCTGCAAGGAATGCAAGCGATGGGTATGATTGGAACGCCAAATCTCCCCTCTCAACTGCGAGCTAATGGAGCCCTTGCTTATGCACAGCAGCTGCGAATGGGTCACGGTCAAATCAGGCAGCAGATGTCTCAGCAAAGTTCACTTAACACTGGACAGGTTCAAGGTTTACCAAGGTCATCATCCCTTGCTTTTATGAACTCTCAGTTGTCTGGGTTGTCGCAGAATGGGCAACCAGGGATGGTTCATAACTCCTTAACACAGCAACAGTGGCTTAAGCAAATGCCAGCAATGTCTGGCCCTGCCTCACCATTGCGTCTTCAACAGCAGCAGAGGCAGTCGCTGGCTTCTTCTACTCAATTGCAACAAAACTCTATGAGCCTGAACCAGCAACAATTGTCCCAGCTGATTCAGCAACAGAAGTCGATGGGGCAGTCTCAGCTGCATCAGCAGCAACAGCAGCAGCAGCCTCAACAACAGCTGCAACAACAGCTCTTACATCAGCAGTCACAACAACAGTCTCATCCACAGGCTTCTGTCCATCAACAGCAACAGTCTCCAAGGATGCCAGGAACTGCAGGCCAAAAGTCATTCAGTCTAACAGGATCACAGCCAGACGCTACTGCATCTGGTGCAACTACACCAGGTGGTAGTTCTAGCCAAGGAACAGAAGCAACAAACCAAGTTCTTGGGAAGAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACAAGGTACACTGGACCCCGAAGTTATAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGACTCTACAACTACACACGGTTGCATTTTGGCAAAACATAGAAAATCATCAACTTTGGAGTCCAAGGATTTATTGCTACACCTAGAGAAAAATTGGGATTTAACAATTCCTGGATATTCAAGTGAAGAGAAGAAGTATCAAAGCAAACCTCAATTAAATGACCTTCACAAGAGGCGCCTAGATATGATTCGCACAATGATGGAATCTTCGGCCTCTGAGTCAAATATTAATAGTTCTAAAGAGTTGAGTAGACAGGGCATTTCAAATCCTACCCCTATGGGAGCTCACCATCTAGTAAGACCCATGAGTTCAGAGCAGTTGGTTTCTCAGGCAGCTGGTTCTCAAATGCTACAGCAGATGACAAGGTTTTAA 3195 0.4936 MEVIEKKPNSAAESEIREECKVGVRSVTMALTFRTLFLMLLAILSLLLFEDWVSTPSCNNTDNIIDDNLKVMMVADLLLSDSGFVNRFFRDYYMSKFFRKSFEVLRPDLLLVLGDVSARGSELTRSKWVSVLRRFYRVLGPFVGLPFHAVLGDRDVGECGDVDVDRVSWIASKFPGLDSSGCAAFEIGNVSFVTLNAVALLCGGSGGLRFDVEKVIERESVEVHMGMERVVKRVNGFGEFADADVLSGSGPVVLLHLPLDQTRNEHFGSVGDFEKYWTSSMEGLNVVPESRGGQYKLLHMLPPNASEYILQALKPRIIFSAHRYTFSDHVHGDRTREISVPAMSWNARDDPGFVIASFQKAGRAVSISHCSLARESQIVLVYISVMFLFCLVCLKGYSESATGIHADSINSKEKSIIDGPCYQLEDNRLCCSKARFLTQIDSPAFRLPSIQLSSLRLPLRAHGRIIAPIDQSITSKSMAESASPSSKPSPMDPQNPAPSSNPTIPSPSHNNMPSPSLPPLPQDQQQQQQQQQQNLHQQLSPPQQQQPLVSSQAMNTINGINPISNFQLQQTLQRSPSMSRLNQIQPQQQAQQQQQFGVMRQQAGLYGGQMSFAAAGGGAGQQQQLGGSNLSRSALIGQSGHFPMLSGAGSQFNLLSSPRQKGGLVQQSQFSGNSAGQSLQGMQAMGMIGTPNLPSQLRANGALAYAQQLRMGHGQIRQQMSQQSSLNTGQVQGLPRSSSLAFMNSQLSGLSQNGQPGMVHNSLTQQQWLKQMPAMSGPASPLRLQQQQRQSLASSTQLQQNSMSLNQQQLSQLIQQQKSMGQSQLHQQQQQQQPQQQLQQQLLHQQSQQQSHPQASVHQQQQSPRMPGTAGQKSFSLTGSQPDATASGATTPGGSSSQGTEATNQVLGKRKIQDLVAQVDPQGTLDPEVIDLLLELADDFIDSTTTHGCILAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKYQSKPQLNDLHKRRLDMIRTMMESSASESNINSSKELSRQGISNPTPMGAHHLVRPMSSEQLVSQAAGSQMLQQMTRF* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0315 1064 MobiDBLite consensus disorder prediction 780 804 - -
Vra9g0315 1064 CDD TAF12 907 975 IPR003228 GO:0005669|GO:0006352
Vra9g0315 1064 MobiDBLite consensus disorder prediction 471 488 - -
Vra9g0315 1064 MobiDBLite consensus disorder prediction 471 550 - -
Vra9g0315 1064 MobiDBLite consensus disorder prediction 574 596 - -
Vra9g0315 1064 Pfam Transcription initiation factor TFIID subunit A 908 975 IPR003228 GO:0005669|GO:0006352
Vra9g0315 1064 MobiDBLite consensus disorder prediction 489 520 - -
Vra9g0315 1064 Gene3D Histone, subunit A 902 977 IPR009072 GO:0046982
Vra9g0315 1064 MobiDBLite consensus disorder prediction 1009 1031 - -
Vra9g0315 1064 MobiDBLite consensus disorder prediction 521 550 - -
Vra9g0315 1064 SUPERFAMILY Metallo-dependent phosphatases 67 362 IPR029052 -
Vra9g0315 1064 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 476 1063 - -
Vra9g0315 1064 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 476 1063 IPR037794 GO:0000124|GO:0005669|GO:0046695
Vra9g0315 1064 SUPERFAMILY Histone-fold 905 976 IPR009072 GO:0046982
Vra9g0315 1064 MobiDBLite consensus disorder prediction 773 804 - -
Vra9g0315 1064 MobiDBLite consensus disorder prediction 824 906 - -
Vra9g0315 1064 MobiDBLite consensus disorder prediction 1009 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0315 Vra-Chr9 2520168 2532650 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0315 K23362 K03126 qsu:112038052 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0315 9 2520168 2532650 Vra9g0315 9 2520168 2532650 ECH