Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0302 ATGAATTTGGAACAAATTGGGCAGCAGCCTAAATCATCTAATGGTTACATCCGTCGGAAATCTGAGAAAGAAGGGGCAACTAAGTCTGATTATAGGATCCCCTCTGGAAAGTCAAATGCCACCAGCAGATTAGCGGGTATAGTGACTGACAGTAAAGGTGTTACTTATGGGAGTCCTTCACATGATCGACTAGTATATTTAACATCATGCCTTATTGGGCAGCATGTAGAAGCCCAGGTGAAAAACGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGACAAAGATTATGGAATCATTTTGAAAATGGCTTGTTTGACAAAGGATGGCTCCTTGCAAGGACAGAGATCAGGCATAGAATCTTTCAGCAAAGCTCCTTCTAAGACTTTAATTATCCCTGCTAATGACCTTGTACAAGTTATAGCAAAGGATGTTTCATTTTTCAGAGATGACCAAACTAGTACACCTCACTATGATATGCATCATGAGATAATGGTTGATTCGGTAATATCTCAATCTCGTCATGTAGAGACGGGCAGAGAATTACAGCCATGGGTACCCGATGAAGAAGATCCAGAATGCCCTGAACTGGAAAATATCTTTGATGGCCCTTGGAATAGGGGATGGGATCAGTTTGAAACAAACAAAATGTTATTTGGTGTAAAAAGCACATTCAATGAGGAGTTATATACAACAAAGCTTGAAAGAGGACCCCAGACAAGAGAGTTGGAAAAGCAAGCTTTAAGAATTGCTAGAGAAATTGAGGGTGAGGAAACCCAAGATCTCCATCTAGCAGAGGAAAGAGGCCTTTACCATAACTTTGATATTGATGAAGAAACCAGATTTTCTTCCGTCTATAGGGGTAACATTGCTGATGATGTTGGATACGATGAAAACGAGGACAAGTTGGATTCACACAATTCTGAAAGGTTTGATAATATTTATGGTTTAGTCAGCAAGAGACCAGGTGAAGTAAGTGGTCAGAAAGGCAATAATGGAGCTCAAACATGGCCTCATTTGTCCTCTGTGGATCACTCGGAGTTACCTCAGTCAACTACTGCTATGGATTTGTGTCGGTCTGGTTCTAATGATCATGCTAAGCAGTTAGCTTCTGAACTCCCTGCCCAGAGTTGCTCATTTTCAGATGGTGAAATCAGGATTCAGGAGAACTCGGCTAGTAACCTACATGGAGCCACTGATAATACAGCGGAAGAAAATTGGATACAAGCTGAGGATGTCCAACTGTCAAAATCTCAGGATTTACAGTCATCACTTGAGTCCAAGAACGATGGTTCTAAGGAAGAGGGTTTATCTTTTAATGGGCCCTCCCGTACTCCTTCTACTCATATTTTGTTTAAGACTCCTGAAGAAACTGTGTCGGTTGGGGAAACAAAGTCTGTAATTTCACGTGGAAGACAAGGTAGTTCTACATCAACCTCTGGTCCGGGTCTATCACCAAGTTCTTCGGTTGGTTCCCTGTCTTCGGAAAAGTCAACTCTGAATCCCTATGCCAAGGAGTTCAAACTGAACCCCAATGCAAAGAGTTTTATGCCATCCCAAGCACATGCTAGGCCCCGCTCCCCAGTGTCTGATGGTTCCTTTTATTACCCAGCTACTGTATCTACCGTACCAAATATGCCAGCCATGCCTATGGGTATTGGAGTTGGAACTACTTTTGCTGGGCCACAACCTGTCATGTATAATCCACAAGTGGCACAAATGCCATCACAACCATATTTTCATCCAAACGGACCACAGTATGGACAACTTCTGGGTCATCCTAGGCAAGTTTTATATGTGCCAAGCTTCCAACCTGAGATGCCTTATAAAGGACGGGATTATTGA 1851 0.4219 MNLEQIGQQPKSSNGYIRRKSEKEGATKSDYRIPSGKSNATSRLAGIVTDSKGVTYGSPSHDRLVYLTSCLIGQHVEAQVKNGSIYSGIFHATNTDKDYGIILKMACLTKDGSLQGQRSGIESFSKAPSKTLIIPANDLVQVIAKDVSFFRDDQTSTPHYDMHHEIMVDSVISQSRHVETGRELQPWVPDEEDPECPELENIFDGPWNRGWDQFETNKMLFGVKSTFNEELYTTKLERGPQTRELEKQALRIAREIEGEETQDLHLAEERGLYHNFDIDEETRFSSVYRGNIADDVGYDENEDKLDSHNSERFDNIYGLVSKRPGEVSGQKGNNGAQTWPHLSSVDHSELPQSTTAMDLCRSGSNDHAKQLASELPAQSCSFSDGEIRIQENSASNLHGATDNTAEENWIQAEDVQLSKSQDLQSSLESKNDGSKEEGLSFNGPSRTPSTHILFKTPEETVSVGETKSVISRGRQGSSTSTSGPGLSPSSSVGSLSSEKSTLNPYAKEFKLNPNAKSFMPSQAHARPRSPVSDGSFYYPATVSTVPNMPAMPMGIGVGTTFAGPQPVMYNPQVAQMPSQPYFHPNGPQYGQLLGHPRQVLYVPSFQPEMPYKGRDY* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0302 616 Coils Coil 242 262 - -
Vra9g0302 616 MobiDBLite consensus disorder prediction 417 499 - -
Vra9g0302 616 MobiDBLite consensus disorder prediction 1 15 - -
Vra9g0302 616 MobiDBLite consensus disorder prediction 322 346 - -
Vra9g0302 616 MobiDBLite consensus disorder prediction 1 37 - -
Vra9g0302 616 SMART LsmAD_2 221 290 IPR009604 -
Vra9g0302 616 MobiDBLite consensus disorder prediction 327 346 - -
Vra9g0302 616 MobiDBLite consensus disorder prediction 16 30 - -
Vra9g0302 616 Pfam LsmAD domain 221 289 IPR009604 -
Vra9g0302 616 PANTHER ATAXIN-2 HOMOLOG 8 609 - -
Vra9g0302 616 MobiDBLite consensus disorder prediction 436 499 - -
Vra9g0302 616 PANTHER ATAXIN 2-RELATED 8 609 IPR045117 GO:0003723
Vra9g0302 616 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0302 Vra-Chr9 2371698 2380986 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0302 - - gmx:100796073 945.266