Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0286 ATGAGTTCAATAGTGGAAAAGAAAGAGTTGGTGAAGGGGAGAGTGGTGTTGATACGGAAGAGTGTGGTTCAAACCATAAGCAGTGTTCAGGGTCTTGTTGCCACTGGCGTCAAGATAATTAACGACTCACCCGAACTTGATATCACTAAGTCTGTGTCTTTCAAATTGATTAGTCGTACCAAGTCAGAGAATGCTTGTAGTTTGGCTGGGAAAGTTGGAAAGGTTGCCTATTTGGAGAATAATGTTTCTGTGTTACGAACTTTGAAAGAGACGCGGGAAGAATTTGATATTTATTTTGAATGGGATGATNAAGATATGGGAACTCCAGGTGCATTTTATGTAACAAACAAAATGAATGAAGAGTTCTTCCTAGTTAGTGTCACTATTGAATATCCAAGTGAACACGACAAGAACAATATTATTCACTTNGACTGTAATTCCTGGGTTCACAACGATAAGCGTAGCGAAANAGGTCGCATATTCTTCGCCAACATTCCATATCTTCCTGATAAGACACCGGTGCAATTACAAGCGTACAGAGAAGAAGAGTTGAAGAATTTAAGGGGGGATGGAACTGGAAAGCGTGAGAAATGGGATAGGATTTATGATTATGATGTATATAATGATCTGGGATTTCTTGACAGCGATGGACAACAAGATCACCCAGTTCTTGGAGGCCTCAAATATCCCTACCCTCGTAGGGTTAGGACTGGGAGAAACGTTATCCACAACAACAAAAATGGTGGTAACTACGAGGAGCAAGCTGAGGTTTATTATGTGCCAAGAGATGAAAATTTCAGTGACGAGAAGACTGCAGAATTCTTTCAATTATCAAAGAAAGCTTTAGGTGGAAGCGTCGAACCTTTGCTCCTATCTTTGTATTTAAAGACCACCTCAAATGAATTTAATGGCTTCGAAGAAGTGCTGAAAATGTATGAAGGTGGAGTTAATCTGCCTCTATCTATCACTGGAAACGGTAATCCAAGTGTCCTTGACTTCCCAACTCCTGATGTAATCAAAGAGAGCAAGTTTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCCGGTGTAAACCCTCTTGTAATTCGGCTTCTTAGAAATGATGACCTTATATCATTGGAGCAACAACTTTGCAACTGTATTCAACACAGTACAGTAGAAACAAAAGAAATATTGGAGAAAAACATGAACGAGATGACACTAGATGAGGCATTTGATAAGAAGAGATTGTTCATATTGGATTACTATGACGCATTCATGGCGTATTTGACGAAGATAAATGAACTTCCTTCTGCAAAGGCTTATGCCACCAGGACATTCTTGTTCTTACAAGATGACGGCACATTGAAACCACTTGTTATTGAATTAAGCAAGCCACATCAATGTCCATGTTGTGGTCAATGGAATGTCGAGACCAGATTGGAGCTGCCTGCAGACAAAGGTGTCGACGGTATAATTTGGTTATTGGCCAAAGCTCATGTTGTTGTAAATGACACCAACTATCATCAGCTCATAAGCCACTGGTTACATACTCACGCAGTGATTGAGCCATTTGCCATATCAACAAACAGGAATCTCAGTGTACTTCACCCCATTTACAAACTCCTTCATCCTCACTTCCGTGACACCATAAATATAAACTCACTTGCCAGGAAGTCCCTAATTAGTGCAGGTAGCGTTATAGAGCAAACTTTTTTGCCTGGACCATATTCTATGGAGATGTCTTCTGCTATATACGAGAAATGGGTTTTCGCTGACCAAGCATTACCAAAGGATCTCATCAATAGAGGTTTGGCGTTTGAGGATGACGCTAACGACCTTAAGCTAGTGATAGAGGACTATCCTTACGCTGTTGATGGACTAGAAATATGGAATGCTACTAAGCTCTGGGTACAAGACTATGTCGCTCTGTATTATTCGGACGATCAGGCAATTAAAGGAGATACTGAATTGCAAGAATGGTGGAAGGAAGTTGTGGAGAAGGGTCATGGTGACTTAAAAGCACAAAAGGGTCATGGTGACTTAAAAGCACAATGGTGTGAAATGCTTACTTCTCAAGATCTGGTTGAGACTTGCACTACCATTATATGGATTGCTTCAGCTCTTCACGCCGCTGTTAATTTTGGACAGTATCCTTATGGTTATATAATGAACCGTCCTACACAAAGCCGAAAATGGATCCCAAAACCAGGAACTGAAGAGTATGATGAGATGACCAAGAATCCTCAAGAAGCTTTTCTGAAAACAATTACTCCAAAGTACCAGACCGTTGTTGATCTTTCAGTAATGGAGCTACTATCAACCCATGCTTCAGACGAGGTGTATCTTGGACAAAGGAACAGTCTAGATTGGACTGCTCATCAAGAAGCAAAAGTTTTGTTTAAAAGATTTACAGATGACTTGGAAAAAATTGAGAAAAAAATCTCAGACAGGAACAACACTGAAGGACTTAAAAATCGTACTGGACCAGTCAAATTGCCCTACACTCTGCTTCTTCCCACCAGTAAACCAGGGATGACTTTTAGAGGAATCCCTAACAGTATCTCTATCTAA 2562 0.4032 MSSIVEKKELVKGRVVLIRKSVVQTISSVQGLVATGVKIINDSPELDITKSVSFKLISRTKSENACSLAGKVGKVAYLENNVSVLRTLKETREEFDIYFEWDDXDMGTPGAFYVTNKMNEEFFLVSVTIEYPSEHDKNNIIHXDCNSWVHNDKRSEXGRIFFANIPYLPDKTPVQLQAYREEELKNLRGDGTGKREKWDRIYDYDVYNDLGFLDSDGQQDHPVLGGLKYPYPRRVRTGRNVIHNNKNGGNYEEQAEVYYVPRDENFSDEKTAEFFQLSKKALGGSVEPLLLSLYLKTTSNEFNGFEEVLKMYEGGVNLPLSITGNGNPSVLDFPTPDVIKESKFAWMTDEEFAREMIAGVNPLVIRLLRNDDLISLEQQLCNCIQHSTVETKEILEKNMNEMTLDEAFDKKRLFILDYYDAFMAYLTKINELPSAKAYATRTFLFLQDDGTLKPLVIELSKPHQCPCCGQWNVETRLELPADKGVDGIIWLLAKAHVVVNDTNYHQLISHWLHTHAVIEPFAISTNRNLSVLHPIYKLLHPHFRDTININSLARKSLISAGSVIEQTFLPGPYSMEMSSAIYEKWVFADQALPKDLINRGLAFEDDANDLKLVIEDYPYAVDGLEIWNATKLWVQDYVALYYSDDQAIKGDTELQEWWKEVVEKGHGDLKAQKGHGDLKAQWCEMLTSQDLVETCTTIIWIASALHAAVNFGQYPYGYIMNRPTQSRKWIPKPGTEEYDEMTKNPQEAFLKTITPKYQTVVDLSVMELLSTHASDEVYLGQRNSLDWTAHQEAKVLFKRFTDDLEKIEKKISDRNNTEGLKNRTGPVKLPYTLLLPTSKPGMTFRGIPNSISI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0286 853 ProSiteProfiles PLAT domain profile. 27 163 IPR001024 GO:0005515
Vra9g0286 853 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 4 853 - -
Vra9g0286 853 SUPERFAMILY Lipoxigenase 168 853 IPR036226 -
Vra9g0286 853 Gene3D - 344 473 - -
Vra9g0286 853 Pfam PLAT/LH2 domain 60 162 IPR001024 GO:0005515
Vra9g0286 853 PRINTS Lipoxygenase signature 487 504 IPR013819 GO:0016702|GO:0046872
Vra9g0286 853 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Vra9g0286 853 PRINTS Lipoxygenase signature 525 545 IPR013819 GO:0016702|GO:0046872
Vra9g0286 853 ProSitePatterns Lipoxygenases iron-binding region signature 2. 532 542 IPR020834 GO:0016702|GO:0046872
Vra9g0286 853 Gene3D PLAT/LH2 domain 1 167 - -
Vra9g0286 853 SMART LH2_4 27 164 IPR001024 GO:0005515
Vra9g0286 853 Pfam Lipoxygenase 176 836 IPR013819 GO:0016702|GO:0046872
Vra9g0286 853 Gene3D - 270 343 IPR027433 -
Vra9g0286 853 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 11 167 IPR036392 GO:0005515
Vra9g0286 853 Gene3D - 483 852 - -
Vra9g0286 853 PRINTS Plant lipoxygenase signature 133 151 IPR001246 GO:0016491
Vra9g0286 853 PRINTS Plant lipoxygenase signature 159 180 IPR001246 GO:0016491
Vra9g0286 853 PRINTS Plant lipoxygenase signature 198 214 IPR001246 GO:0016491
Vra9g0286 853 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Vra9g0286 853 PRINTS Plant lipoxygenase signature 299 320 IPR001246 GO:0016491
Vra9g0286 853 PRINTS Plant lipoxygenase signature 438 462 IPR001246 GO:0016491
Vra9g0286 853 PRINTS Plant lipoxygenase signature 766 780 IPR001246 GO:0016491
Vra9g0286 853 PANTHER LIPOXYGENASE 4 853 IPR000907 GO:0016702|GO:0046872
Vra9g0286 853 ProSitePatterns Lipoxygenases iron-binding region signature 1. 505 519 IPR020833 GO:0016702|GO:0046872
Vra9g0286 853 Gene3D - 168 269 - -
Vra9g0286 853 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 166 853 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0286 Vra-Chr9 2163746 2167566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0286 11 853 Acyl Lipid Metabolism Gene Families AT3G22400 47.206 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0286 K15718 - gmx:100802685 1130.55